Transcript 525036

Transcript

ID CARD

MetamORF ID

525036

ENSMUST00000162386

Name

Luc7l2-209

Strand

Biotype

nonsense_mediated_decay

Start-end positions

38551514-38609468

CDS Start-stop positions

38565671-38585065

CDS Relative positions

Sequences

Transcript sequence

GAC ...

Genome browsers

UCSC

Gene

NCBI:192196

Aliases

4930471C18Rik,
AA522013, AU015269, CGI59,
Cgi74, ENSMUSG00000029823, Luc7l2,
MGI:2183260, NCBI:192196, OFF:Luc7l2

Chr 6

ORFs

16 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
528146	126	GTG ...	VSG ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	NMD sORF Upstream	Spleen_B_cell
526276	42	CTG ...	LAG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative NMD sORF Upstream	Spleen_B_cell
70815	30	CTG ...	LPF ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	NMD sORF Upstream	BMDC, Spleen_B_cell
197468	36	GTG ...	VIE ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF, Spleen_B_cell
69937	96	CTG ...	LCR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	NMD sORF Upstream	Spleen_B_cell
192589	30	GTG ...	VSA ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Downstream NMD sORF	MEF, Spleen_B_cell
525360	120	GTG ...	VPH ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF Upstream	Spleen_B_cell
529180	90	TTG ...	LFR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Downstream NMD sORF	Spleen_B_cell
526104	105	CTG ...	LPA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF Upstream	Spleen_B_cell
69651	36	CTG ...	LRG ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF, Spleen_B_cell
415596	129	TTG ...	LVS ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	NMD sORF Upstream	Spleen_B_cell
415605	234	GTG ...	VRS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative NMD sORF Upstream	Spleen_B_cell
525577	132	GTG ...	VLV ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	NMD sORF Upstream	Spleen_B_cell
204722	36	GTG ...	VSR ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative NMD sORF Upstream	MEF, Spleen_B_cell
198683	45	TTG ...	LQI ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF, Spleen_B_cell
527002	126	TTG ...	LCE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Spleen_B_cell

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