Transcript 69938 | MetamORF

Transcript

ID CARD

MetamORF ID

69938

ENSMUST00000057692

Name

Luc7l2-201

Strand

Biotype

protein_coding

Start-end positions

38551465-38609470

CDS Start-stop positions

38551848-38608330

CDS Relative positions

Sequences

Transcript sequence

CGC ...

Genome browsers

UCSC

Gene

NCBI:192196

Aliases

4930471C18Rik,
AA522013, AU015269, CGI59,
Cgi74, ENSMUSG00000029823, Luc7l2,
MGI:2183260, NCBI:192196, OFF:Luc7l2

Chr 6

ORFs

27 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
208745	123	ATG ...	MKS ...	Ribo-seq	ATG		8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, MEF, NSC, R1E, v6-5
204411	45	ATG ...	MKS ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, MEF, R1E
528146	126	GTG ...	VSG ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, MEF, Neutrophil
415605	234	GTG ...	VRS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3
1249059	57	ATC ...	IQE ...	Ribo-seq	ATC		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
197468	36	GTG ...	VIE ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, MEF, R1E
210456	150	ATG ...	MWK ...	Ribo-seq	ATG		4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, MEF, NSC
526276	42	CTG ...	LAG ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, MEF, Neutrophil
69651	36	CTG ...	LRG ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, MEF, R1E
527847	114	TTG ...	LTA ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	sORF Upstream	3T3, MEF, Neutrophil
528338	165	TTG ...	LLG ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, MEF, Neutrophil
415596	129	TTG ...	LVS ...	Ribo-seq	TTG	strong	5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, MEF, Neutrophil
525577	132	GTG ...	VLV ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, MEF, Neutrophil
69937	96	CTG ...	LCR ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative sORF Upstream	3T3, MEF, Neutrophil, Testis
204722	36	GTG ...	VSR ...	Ribo-seq	GTG	weak	8	sORFs_org_Mouse	Alternative sORF Upstream	3T3, MEF, Neutrophil, NSC, R1E, v6-5
527641	162	CTG ...	LGG ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, MEF, Neutrophil
525360	120	GTG ...	VPH ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3
839189	147	GTG ...	VRN ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
198683	45	TTG ...	LQI ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, R1E
192589	30	GTG ...	VSA ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF
210384	159	CTG ...	LKE ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, MEF
836200	72	ATG ...	MWK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
70815	30	CTG ...	LPF ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Liver, MEF, Neutrophil, Testis, v6-5
977681	231	ACG ...	TTP ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF
1740574	66	ATG ...	MTM ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
836102	153	CTG ...	LRA ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF Upstream	MEF
526104	105	CTG ...	LPA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, NSC

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