Transcript 368712

Transcript

ID CARD

MetamORF ID

368712

ENSMUST00000150499

Name

Lsg1-208

Strand

Biotype

retained_intron

Start-end positions

30564678-30587563

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGT ...

Genome browsers

UCSC

Gene

NCBI:224092

Aliases

5830465I20,
AA409273, D16Bwg1547e, ENSMUSG00000022538,
Lsg1, MGI:107236, NCBI:224092,
OFF:Lsg1

Chr 16

ORFs

30 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
476412	105	CTG ...	LNL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
1715301	39	GTG ...	VKD ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	MEF
475600	72	TTG ...	LIL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
695503	102	ATG ...	MRG ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	B_cell, MEF
475673	57	CTG ...	LKQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
475428	99	CTG ...	LGS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
475829	66	TTG ...	LTP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
368891	147	CTG ...	LHT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
371522	96	CTG ...	LVS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
371985	75	CTG ...	LEL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, MEF
374104	114	GTG ...	VNN ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	MEF
476826	78	GTG ...	VGP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
370791	120	CTG ...	LNI ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
1146421	72	ATG ...	MIA ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
33595	78	CTG ...	LSF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
693037	36	GTG ...	VNS ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	B_cell
367611	294	TTG ...	LIS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
692756	111	GTG ...	VLL ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	B_cell
693363	114	TTG ...	LYP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
693052	105	TTG ...	LMR ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	B_cell
693602	108	CTG ...	LLM ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	B_cell
475506	30	CTG ...	LKW ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
370526	93	GTG ...	VSK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	MEF
475537	72	CTG ...	LED ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
474555	129	GTG ...	VVC ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
793807	222	GTG ...	VKE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
474147	81	GTG ...	VVG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
692693	105	CTG ...	LRL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
34852	81	CTG ...	LLS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
474748	90	GTG ...	VTE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	B_cell

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