Transcript 681791

Transcript

ID CARD

MetamORF ID

681791

ENSMUST00000154531

Name

Lrrc14-208

Strand

Biotype

retained_intron

Start-end positions

76710663-76715130

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

NCBI:223664

Aliases

E130306I01Rik,
ENSMUSG00000033728, Lrrc14, MGI:2445060,
mKIAA0014, NCBI:223664, OFF:Lrrc14

Chr 15

ORFs

30 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
683330	210	CTG ...	LSV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
685057	207	GTG ...	VVH ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Intronic sORF	3T3
682692	57	GTG ...	VLW ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
684792	75	CTG ...	LSF ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
683481	90	CTG ...	LAQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
683167	51	ATG ...	MRR ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
682241	162	CTG ...	LRL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
686215	42	GTG ...	VPM ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
683900	81	CTG ...	LLA ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
684057	147	GTG ...	VHG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	3T3
684369	270	TTG ...	LSM ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
688504	75	GTG ...	VRS ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
683645	207	CTG ...	LRE ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
688039	273	CTG ...	LLP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
683304	255	TTG ...	LCS ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
684559	156	CTG ...	LHY ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
685693	141	CTG ...	LEA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
688194	123	TTG ...	LVV ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Intronic sORF	B_cell
31041	81	CTG ...	LRV ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, B_cell
688428	84	CTG ...	LLL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
687906	231	GTG ...	VVQ ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
681790	105	GTG ...	VEA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
687681	120	GTG ...	VDG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	3T3
31866	60	GTG ...	VVR ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	B_cell
681932	189	GTG ...	VAR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	3T3
682301	219	TTG ...	LRG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	3T3
688275	246	CTG ...	LLR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
31246	117	ATG ...	MSG ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, B_cell
687169	132	TTG ...	LQA ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, B_cell
685106	189	GTG ...	VDC ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3

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