Transcript 1854203

Transcript

ID CARD

MetamORF ID

1854203

ENSMUST00000142610

Name

Lrrc14-207

Strand

Biotype

nonsense_mediated_decay

Start-end positions

76710643-76715052

CDS Start-stop positions

76712892-76713822

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

NCBI:223664

Aliases

E130306I01Rik,
ENSMUSG00000033728, Lrrc14, MGI:2445060,
mKIAA0014, NCBI:223664, OFF:Lrrc14

Chr 15

ORFs

31 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1855436	174	CTG ...	LLS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	R1E
685106	189	GTG ...	VDC ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	R1E
1855669	84	GTG ...	VIL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	R1E
1854202	210	GTG ...	VLR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	R1E
683900	81	CTG ...	LLA ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	R1E
684559	156	CTG ...	LHY ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Downstream NMD sORF	R1E
682692	57	GTG ...	VLW ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	R1E
1855990	153	CTG ...	LQE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	R1E
1855931	195	GTG ...	VHT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	R1E
681790	105	GTG ...	VEA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	R1E
1856208	156	CTG ...	LLQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	R1E
1855194	72	CTG ...	LTA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	R1E
1854397	270	CTG ...	LPR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	R1E
685057	207	GTG ...	VVH ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	R1E
1856285	78	CTG ...	LGL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	R1E
688275	246	CTG ...	LLR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	R1E
688428	84	CTG ...	LLL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	R1E
685693	141	CTG ...	LEA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	R1E
31246	117	ATG ...	MSG ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative NMD sORF Upstream	Glioma, Liver, MEF, MESC
687906	231	GTG ...	VVQ ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	R1E
1619650	36	ATG ...	MCS ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative Downstream NMD sORF	Glioma, Liver, MEF, MESC
1855246	198	CTG ...	LVH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	R1E
1855773	279	CTG ...	LPL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	R1E
1854656	249	CTG ...	LLF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	R1E
684369	270	TTG ...	LSM ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	R1E
682241	162	CTG ...	LRL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Downstream NMD sORF	R1E
1856333	237	GTG ...	VAF ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	R1E
688039	273	CTG ...	LLP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	R1E
1856357	120	CTG ...	LQE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	R1E
1855217	123	CTG ...	LLQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	R1E
683645	207	CTG ...	LRE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	R1E

Export data