Transcript 13130 | MetamORF

Transcript

ID CARD

MetamORF ID

13130

ENSMUST00000160011

Name

Lrpprc-203

Strand

Biotype

nonsense_mediated_decay

Start-end positions

84731180-84751262

CDS Start-stop positions

84740083-

CDS Relative positions

Sequences

Transcript sequence

TGA ...

Genome browsers

UCSC

Gene

NCBI:72416

Aliases

3110001K13Rik,
C76645, ENSMUSG00000024120, Gp130,
Lrp130, Lrpprc, Lsfc,
MGI:1919666, NCBI:72416, OFF:Lrpprc

Chr 17

ORFs

29 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1192751	63	ACG ...	TGN ...	Ribo-seq	ACG		1	sORFs_org_Mouse	NMD sORF	E14
1192150	51	ATA ...	IKN ...	Ribo-seq	ATA		1	sORFs_org_Mouse	NMD sORF	E14
36026	150	TTG ...	LSF ...	Ribo-seq	TTG		5	sORFs_org_Mouse	NMD sORF	3T3, Brain, Neutrophil, Testis
1193187	42	ATT ...	ITK ...	Ribo-seq	ATT		1	sORFs_org_Mouse	NMD sORF	E14
1193774	75	ACG ...	TTS ...	Ribo-seq	ACG		1	sORFs_org_Mouse	NMD sORF	E14
705364	72	GTG ...	VTL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	NMD sORF	3T3, BMDC, Neutrophil
1192492	99	ACG ...	TML ...	Ribo-seq	ACG		1	sORFs_org_Mouse	NMD sORF	E14
708779	90	GTG ...	VTY ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NMD sORF	3T3, E14
1193918	66	AGG ...	RIH ...	Ribo-seq	AGG		1	sORFs_org_Mouse	NMD sORF	E14
1190286	36	AAG ...	KKL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	NMD sORF	E14
707784	81	CTG ...	LLL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	3T3
383247	60	TTG ...	LAK ...	Ribo-seq	TTG		5	sORFs_org_Mouse	NMD sORF	3T3, BMDC, Brain, Neutrophil
1152040	60	TTG ...	LPA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	v6-5
706222	105	ATG ...	MLS ...	Ribo-seq	ATG		4	sORFs_org_Mouse	NMD sORF	3T3, E14, MEF, v6-5
381527	123	GTG ...	VSQ ...	Ribo-seq	GTG		7	sORFs_org_Mouse	NMD sORF	3T3, B_cell, Brain, E14, v6-5
1194554	33	AAG ...	KLR ...	Ribo-seq	AAG		1	sORFs_org_Mouse	NMD sORF	E14
706269	117	GTG ...	VFP ...	Ribo-seq	GTG		3	sORFs_org_Mouse	NMD sORF	3T3, MEF, v6-5
799095	69	CTG ...	LQT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	B_cell
1192785	45	AAG ...	KLV ...	Ribo-seq	AAG		1	sORFs_org_Mouse	NMD sORF	E14
707252	78	CTG ...	LLL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	3T3, E14
383930	75	GTG ...	VLP ...	Ribo-seq	GTG		8	sORFs_org_Mouse	NMD sORF	3T3, B_cell, BMDC, Brain, E14, MEF, v6-5
13129	63	TTG ...	LLS ...	Ribo-seq	TTG		4	sORFs_org_Mouse	NMD sORF	3T3, B_cell, E14, Skin_tumor
706318	102	CTG ...	LSS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	NMD sORF	3T3, E14, MEF, v6-5
1191096	99	ATT ...	IAC ...	Ribo-seq	ATT		1	sORFs_org_Mouse	NMD sORF	E14
1191056	39	AAG ...	KII ...	Ribo-seq	AAG		1	sORFs_org_Mouse	NMD sORF	E14
702539	72	TTG ...	LKP ...	Ribo-seq	TTG		2	sORFs_org_Mouse	NMD sORF	3T3, E14
36714	87	CTG ...	LHE ...	Ribo-seq	CTG		8	sORFs_org_Mouse	NMD sORF	3T3, BMDC, Brain, Liver, Neutrophil, Testis
1192594	39	AAG ...	KCY ...	Ribo-seq	AAG		1	sORFs_org_Mouse	NMD sORF	E14
1192887	33	ATT ...	IEV ...	Ribo-seq	ATT		1	sORFs_org_Mouse	NMD sORF	E14

Export data