Transcript 63335 | MetamORF

Transcript

ID CARD

MetamORF ID

63335

ENSMUST00000153664

Name

Lrpap1-205

Strand

Biotype

protein_coding

Start-end positions

35093069-35102514

CDS Start-stop positions

35093324-

CDS Relative positions

Sequences

Transcript sequence

CCG ...

Genome browsers

UCSC

Gene

NCBI:16976

Aliases

AA617339,
AI790446, AU042172, C77774,
ENSMUSG00000029103, HBP44, Lrpap1,
MGI:96829, NCBI:16976, OFF:Lrpap1,
RAP

Chr 5

ORFs

13 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
905910	141	ATC ...	ICG ...	Ribo-seq	ATC		2	sORFs_org_Mouse	sORF	BMDC, E14
63334	30	CTG ...	LRR ...	Ribo-seq	CTG		5	sORFs_org_Mouse	sORF	3T3, BMDC, E14, R1E, Testis
181872	54	TTG ...	LKS ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	sORF	3T3, BMDC
65888	42	CTG ...	LPT ...	Ribo-seq	CTG		4	sORFs_org_Mouse	sORF	3T3, BMDC, E14, Testis
66436	108	CTG ...	LRR ...	Ribo-seq	CTG		7	sORFs_org_Mouse	sORF	3T3, E14, Neutrophil, NSC, Testis, v6-5
1234485	111	ATA ...	IRA ...	Ribo-seq	ATA		1	sORFs_org_Mouse	sORF	E14
66519	120	CTG ...	LPT ...	Ribo-seq	CTG		6	sORFs_org_Mouse	sORF	3T3, E14, NSC, Testis, v6-5
1238132	63	AGG ...	RPK ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	sORF	E14
169753	33	GTG ...	VGP ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	sORF	3T3, BMDC
906401	33	AGG ...	RRR ...	Ribo-seq	AGG		2	sORFs_org_Mouse	sORF	BMDC, E14
181173	66	TTG ...	LRP ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF	3T3
64969	33	CTG ...	LEK ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF	3T3, R1E, Testis
903081	63	ATC ...	ICG ...	Ribo-seq	ATC		2	sORFs_org_Mouse	sORF	BMDC, E14

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