Transcript 714547

Transcript

ID CARD

MetamORF ID

714547

ENSMUST00000128651

Name

Lmnb1-202

Strand

Biotype

retained_intron

Start-end positions

56728441-56733456

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AAG ...

Genome browsers

UCSC

Gene

NCBI:16906

Aliases

ENSMUSG00000024590,
Lmnb1, MGI:96795, NCBI:16906,
OFF:Lmnb1

Chr 18

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
484501	66	TTG ...	LSM ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1196775	120	AAG ...	KDA ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
1543733	159	CTG ...	LHE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
1198605	84	AAG ...	KSL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
801536	216	TTG ...	LVE ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, E14
485333	78	CTG ...	LGV ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	E14
1199198	123	AGG ...	RLY ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
714546	42	TTG ...	LEF ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, E14
1197908	75	AGG ...	RGQ ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
801533	171	CTG ...	LAQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
1199257	111	AAG ...	KQL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
1199279	174	AAG ...	KLA ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
802043	207	GTG ...	VDS ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, E14
1196875	39	AGG ...	RTW ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
801113	42	CTG ...	LRT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
715847	81	GTG ...	VDL ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain
1197871	234	AGG ...	RKH ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
716572	75	TTG ...	LEN ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain
485118	90	ATG ...	MKL ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, E14
1198738	69	ATT ...	IWR ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Intronic sORF	E14
1197529	60	ATC ...	IAV ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	E14
801192	108	CTG ...	LAT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
802104	213	GTG ...	VEV ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, E14

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