Transcript 368938

Transcript

ID CARD

MetamORF ID

368938

ENSMUST00000095062

Name

Lmbrd1-201

Strand

Biotype

protein_coding

Start-end positions

24678926-24766301

CDS Start-stop positions

24685547-24762736

CDS Relative positions

Sequences

Transcript sequence

GCT ...

Genome browsers

UCSC

Gene

NCBI:68421

Aliases

0910001K20Rik,
AV347960, ENSMUSG00000073725, Lmbrd1,
MGI:1915671, NCBI:68421, OFF:Lmbrd1

Chr 1

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
139860	120	CTG ...	LPT ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Spleen_B_cell
390753	60	GTG ...	VPL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, NSC, Spleen_B_cell
152956	96	CTG ...	LRS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
319232	93	CTG ...	LSF ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Spleen_B_cell
129384	96	TTG ...	LCT ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, MEF, NSC, Spleen_B_cell
482670	42	CTG ...	LGL ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	MEF, Spleen_B_cell
403279	78	CTG ...	LPT ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Spleen_B_cell
130952	84	TTG ...	LAF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
368937	54	TTG ...	LCL ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, NSC, Spleen_B_cell
134712	117	GTG ...	VCS ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, NSC, Spleen_B_cell
267557	54	CTG ...	LCV ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, Spleen_B_cell
641325	33	CTG ...	LVL ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
307417	36	TTG ...	LYP ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF
11797	30	ATG ...	MRT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
484699	45	TTG ...	LLG ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	MEF, Spleen_B_cell
409130	57	TTG ...	LCT ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Spleen_B_cell
152578	45	CTG ...	LHT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
366892	48	TTG ...	LKT ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF
338216	42	CTG ...	LDP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell
138898	132	CTG ...	LSF ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, NSC, Spleen_B_cell
153702	69	TTG ...	LGN ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, NSC, Spleen_B_cell
357779	78	GTG ...	VCS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Spleen_B_cell
120620	69	ATG ...	MRT ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, Spleen_B_cell

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