Transcript 13738 | MetamORF

Transcript

ID CARD

MetamORF ID

13738

ENSMUST00000155895

Name

Lman1-206

Strand

Biotype

processed_transcript

Start-end positions

65989026-65994888

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TAC ...

Genome browsers

UCSC

Gene

NCBI:70361

Aliases

2610020P13Rik,
AI326273, AU043785, C730041J05,
ENSMUSG00000041891, ERGIC53, F5F8D,
gp58, Lman1, MCFD1,
MGI:1917611, MR60, NCBI:70361,
OFF:Lman1, P58

Chr 18

ORFs

27 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
13737	240	GTG ...	VFE ...	Ribo-seq	GTG		16	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
801222	222	CTG ...	LRQ ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, R1E
1361400	102	GTG ...	VPK ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	E14, Liver
1198407	249	ATC ...	IFE ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	E14
394178	81	CTG ...	LCQ ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, E14, Liver, NSC, v6-5
13874	198	CTG ...	LNR ...	Ribo-seq	CTG		14	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
13888	186	CTG ...	LDM ...	Ribo-seq	CTG		14	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
1198171	48	AGG ...	RCL ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
1200159	207	ATC ...	IKQ ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	E14
1154947	117	ATG ...	MIM ...	Ribo-seq	ATG		3	sORFs_org_Mouse	ncRNA sORF	E14, Liver, v6-5
1198585	30	AGG ...	RRS ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	ncRNA sORF	E14
13759	249	CTG ...	LRQ ...	Ribo-seq	CTG		16	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
39573	60	CTG ...	LDT ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Liver, R1E, Testis
1197460	30	ATT ...	ILR ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	E14
801607	186	CTG ...	LEI ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain
1197857	30	ATC ...	IVF ...	Ribo-seq	ATC	strong	1	sORFs_org_Mouse	ncRNA sORF	E14
1006157	159	CTG ...	LDM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
802424	213	GTG ...	VFE ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, R1E
13627	42	TTG ...	LKD ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	ncRNA sORF	B_cell
40653	48	GTG ...	VKS ...	Ribo-seq	GTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, Liver, R1E, Testis
1006449	171	CTG ...	LNR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
1198700	51	AGG ...	RRS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
1154629	111	ATG ...	MNS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	Liver, v6-5
1413951	108	GTG ...	VEN ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	Liver, NSC, R1E
13810	213	CTG ...	LEI ...	Ribo-seq	CTG		14	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, Liver, MEF, Neutrophil, R1E, Skin_tumor, Testis, v6-5
1199927	219	ATT ...	IHL ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	E14
1199607	276	ATC ...	IFE ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	E14

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