Transcript 323290

Transcript

ID CARD

MetamORF ID

323290

ENSMUST00000146499

Name

Lgmn-203

Strand

Biotype

retained_intron

Start-end positions

102400102-102406146

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TAA ...

Genome browsers

UCSC

Gene

NCBI:19141

Aliases

AEP,
AI746452, AU022324, ENSMUSG00000021190,
Lgmn, MGI:1330838, NCBI:19141,
OFF:Lgmn, Prsc1

Chr 12

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
323964	84	GTG ...	VFY ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	Brain, MEF, R1E, Spleen_B_cell
326006	120	ATG ...	MQL ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
323289	45	GTG ...	VTG ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	Brain, MEF
459703	51	ATG ...	MPC ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Intronic sORF	Brain, MEF, Spleen_B_cell
1532638	60	CTG ...	LSR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
997176	99	CTG ...	LRG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
25571	66	ATG ...	MSS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	Brain, Spleen_B_cell
328094	111	CTG ...	LRP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
997302	102	GTG ...	VLR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
997191	39	CTG ...	LPD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
458902	81	GTG ...	VAP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Spleen_B_cell
996970	111	CTG ...	LAH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
997082	102	GTG ...	VIN ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
328692	39	CTG ...	LLL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	Brain, Spleen_B_cell
323570	84	ATG ...	MPA ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	MEF, Spleen_B_cell
458855	87	TTG ...	LTV ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Spleen_B_cell
997164	126	GTG ...	VTP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain

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