Transcript 989531

Transcript

ID CARD

MetamORF ID

989531

ENSMUST00000217613

Name

Ldlr-207

Strand

Biotype

retained_intron

Start-end positions

21736107-21740086

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCT ...

Genome browsers

UCSC

Gene

NCBI:16835

Aliases

ENSMUSG00000032193,
Hlb301, Ldlr, MGI:96765,
NCBI:16835, OFF:Ldlr

Chr 9

ORFs

31 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
434990	60	CTG ...	LDP ...	Ribo-seq	CTG	strong	6	sORFs_org_Mouse	Intronic sORF	Liver, MEF, Neutrophil, NSC
6117	60	GTG ...	VFG ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
263093	57	GTG ...	VTN ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil
254959	99	CTG ...	LLP ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil
1585306	60	ATG ...	MHT ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	MEF
268492	123	CTG ...	LDR ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil
6153	39	GTG ...	VRL ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Liver, MEF
257030	204	TTG ...	LSY ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Intronic sORF	E14, MEF, Neutrophil
761156	105	TTG ...	LDK ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Intronic sORF	MEF
618291	39	CTG ...	LFP ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	Liver, MEF
263946	87	CTG ...	LKN ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil
257177	93	GTG ...	VAD ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Intronic sORF	E14, MEF, Neutrophil, NSC
621586	36	GTG ...	VRT ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil
268408	225	CTG ...	LMD ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil
624257	45	CTG ...	LQP ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Intronic sORF	E14, Liver, MEF
619922	45	TTG ...	LTS ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC
438140	39	CTG ...	LDR ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Intronic sORF	Liver, MEF, Neutrophil, NSC
1388765	171	CTG ...	LAS ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	MEF
624109	57	GTG ...	VPG ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Intronic sORF	E14, MEF
437853	60	GTG ...	VHQ ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
257697	75	GTG ...	VAL ...	Ribo-seq	GTG	strong	4	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil
269877	162	CTG ...	LLF ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Intronic sORF	E14, MEF, Neutrophil
621539	33	CTG ...	LCE ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC
255867	174	CTG ...	LHA ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil, NSC
264754	156	CTG ...	LAV ...	Ribo-seq	CTG	strong	5	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil, NSC
434234	63	GTG ...	VSG ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Intronic sORF	Liver, MEF, NSC
760071	96	GTG ...	VCD ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
260473	60	CTG ...	LFQ ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil, NSC
266451	138	TTG ...	LDN ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
438215	75	GTG ...	VSQ ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
254713	78	GTG ...	VVA ...	Ribo-seq	GTG	strong	4	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil

Export data