Transcript 35485 | MetamORF

Transcript

ID CARD

MetamORF ID

35485

ENSMUST00000023509

Name

Klhl24-201

Strand

Biotype

protein_coding

Start-end positions

20097554-20127744

CDS Start-stop positions

20106724-20123106

CDS Relative positions

Sequences

Transcript sequence

GAC ...

Genome browsers

UCSC

Gene

NCBI:75785

Aliases

1110046J11Rik,
4930429H24Rik, 6530402O20Rik, C85082,
ENSMUSG00000062901, Klhl24, MGI:1923035,
NCBI:75785, OFF:Klhl24

Chr 16

ORFs

116 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
35484	69	TTG ...	LVK ...	Ribo-seq	TTG		12	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, R1E, Testis, v6-5
371687	69	TTG ...	LRP ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver
477825	84	CTG ...	LAV ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, E14, Spleen_B_cell
693479	51	GTG ...	VLS ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, v6-5
695385	105	GTG ...	VMN ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, v6-5
1147976	42	TTG ...	LVE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
1146811	120	TTG ...	LAT ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, v6-5
372160	39	CTG ...	LYR ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, v6-5
794217	54	GTG ...	VNE ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
374973	222	TTG ...	LTS ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, v6-5
368922	96	CTG ...	LSS ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, v6-5
1189463	135	GTG ...	VPL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF Upstream	E14
1189610	153	ATA ...	IKA ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
370810	81	CTG ...	LCG ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, v6-5
1147692	39	GTG ...	VED ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	E14, NSC, v6-5
695269	93	ATG ...	MLS ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, E14, Glioma, Liver, MEF, MESC, v6-5
1187528	36	AAG ...	KQG ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
375447	231	ATG ...	MSI ...	Ribo-seq	ATG	moderate	8	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, v6-5
693373	33	CTG ...	LQQ ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, v6-5
371799	48	GTG ...	VLR ...	Ribo-seq	GTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, NSC, v6-5
1148144	30	CTG ...	LMI ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	NSC, v6-5
1185628	66	AGG ...	RPS ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
697209	30	GTG ...	VMS ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14
1188256	39	ATC ...	IVG ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1186490	72	ACG ...	TIL ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1148293	33	ATG ...	MAS ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC, v6-5
474871	63	TTG ...	LEA ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Spleen_B_cell
1188135	36	ATA ...	IDT ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
370435	30	ATG ...	MYK ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver
1188650	45	ATA ...	ITQ ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
1187993	69	AAG ...	KYH ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
951029	33	ATT ...	ISQ ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
373936	168	ATG ...	MCP ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Glioma, Liver, MEF, MESC, v6-5
370165	54	GTG ...	VIP ...	Ribo-seq	GTG	weak	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, v6-5
695209	87	TTG ...	LPR ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14
373505	66	CTG ...	LRQ ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14
35689	81	TTG ...	LPG ...	Ribo-seq	TTG		11	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, R1E, Testis, v6-5
1189560	48	ACG ...	TGV ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
1147831	69	ATG ...	MEV ...	Ribo-seq	ATG	strong	4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC, v6-5
371755	84	GTG ...	VHH ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, v6-5
1187634	66	ATT ...	IPP ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
372420	138	ATG ...	MVK ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14
1188328	120	ACG ...	TGK ...	Ribo-seq	ACG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1186286	75	AGG ...	RRM ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1185991	72	AGG ...	RQC ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
370512	156	ATG ...	MKN ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, v6-5
371830	129	ATG ...	MNL ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, v6-5
793593	69	TTG ...	LWL ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
1187406	87	ATA ...	ILF ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
370656	30	TTG ...	LFR ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, v6-5
368639	102	TTG ...	LLA ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, v6-5
421919	39	AAG ...	KKI ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	sORF Upstream	C2C12
696526	96	TTG ...	LLL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, v6-5
371774	102	ATG ...	MEK ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14
373077	30	ATG ...	MQD ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Glioma, Liver, MEF, MESC, NSC
378524	207	TTG ...	LKT ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14
371966	117	GTG ...	VED ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14
1187353	123	AAG ...	KEK ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1186145	48	GTG ...	VQL ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14
697418	120	TTG ...	LII ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, v6-5
369737	189	TTG ...	LHY ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, v6-5
696550	48	CTG ...	LKL ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF
371444	99	TTG ...	LAA ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, v6-5
793418	45	TTG ...	LED ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, E14
1188359	33	AGG ...	RKI ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
378052	57	ATG ...	MLR ...	Ribo-seq	ATG		14	sORFs_org_Mouse Johnstone2016	sORF Upstream	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, R1E, v6-5
372674	237	TTG ...	LPT ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, v6-5
375504	174	TTG ...	LRM ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, v6-5
1186680	51	ATT ...	IPF ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
369451	75	ATG ...	MSS ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Brain, Glioma, Liver, MEF, MESC, v6-5
369789	195	CTG ...	LKT ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, v6-5
371407	36	TTG ...	LIC ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Liver
374491	63	TTG ...	LGC ...	Ribo-seq	TTG	strong	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14
368186	138	TTG ...	LTK ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, v6-5
368471	66	GTG ...	VWS ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, MEF, NSC
953606	84	ATT ...	ILP ...	Ribo-seq	ATT		1	sORFs_org_Mouse	sORF Upstream	BMDC
373354	147	CTG ...	LFV ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
477154	102	GTG ...	VAE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Spleen_B_cell
1188722	81	AGG ...	RNP ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
695457	33	GTG ...	VFS ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, v6-5
1189599	216	ACG ...	TIP ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1185781	42	ATT ...	IYQ ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
372788	87	CTG ...	LLR ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, NSC
370700	129	GTG ...	VWK ...	Ribo-seq	GTG	weak	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, v6-5
697393	30	TTG ...	LCQ ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, NSC, v6-5
696883	57	ATG ...	MPS ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Glioma, Liver, MEF, MESC, v6-5
370669	105	ATG ...	MLL ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, Brain, Glioma, Liver, MEF, MESC, v6-5
694453	93	TTG ...	LQL ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14
1187133	57	ACG ...	TIP ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
374633	87	ATG ...	MGK ...	Ribo-seq	ATG	strong	4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, v6-5
377468	54	CTG ...	LRS ...	Ribo-seq	CTG		10	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, R1E, v6-5
1188246	126	ATA ...	ISW ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
698074	102	ATG ...	MNL ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, v6-5
477797	78	GTG ...	VAR ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, E14, Spleen_B_cell
1185486	48	ATA ...	IKA ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
370854	39	CTG ...	LQC ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14
953689	48	AGT ...	SYI ...	Ribo-seq	AGT		1	sORFs_org_Mouse	sORF Upstream	BMDC
1189320	231	AGG ...	RQC ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
368180	156	GTG ...	VVC ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1186401	57	AGG ...	RSG ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
368893	90	ATG ...	MMG ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, v6-5
1187653	63	ATT ...	ILG ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
373746	48	TTG ...	LKT ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver
1188992	123	GTG ...	VED ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1186397	33	ATC ...	IPR ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	sORF Upstream	E14
1186153	36	ACG ...	TQI ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1188488	78	ATG ...	MTQ ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14
1188462	33	ATC ...	IRV ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
372622	141	ATG ...	MSL ...	Ribo-seq	ATG	weak	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, v6-5
698136	48	GTG ...	VEE ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, v6-5
1187931	117	ATT ...	IIS ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1189214	51	ACG ...	TQV ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
368364	198	ATG ...	MLK ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, v6-5
376288	189	ATG ...	MYK ...	Ribo-seq	ATG		2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Brain, Glioma, Liver, MEF, MESC
691991	90	TTG ...	LVK ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, v6-5
375483	171	ATG ...	MSS ...	Ribo-seq	ATG	weak	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, Spleen_B_cell, v6-5

Export data