Transcript 1121432

Transcript

ID CARD

MetamORF ID

1121432

ENSMUST00000117467

Name

Klhl20-202

Strand

Biotype

nonsense_mediated_decay

Start-end positions

161088380-161131428

CDS Start-stop positions

161090427-161130396

CDS Relative positions

Sequences

Transcript sequence

AGA ...

Genome browsers

UCSC

Gene

NCBI:226541

Aliases

AI504637,
D930050H05Rik, ENSMUSG00000026705, Kleip,
Klhl20, MGI:2444855, mKIAA4210,
NCBI:226541, OFF:Klhl20

Chr 1

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
92714	258	CTG ...	LID ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	R1E
95755	174	CTG ...	LAE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	R1E, v6-5
30379	48	TTG ...	LKT ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, v6-5
1126156	78	GTG ...	VAV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	v6-5
934359	48	AGG ...	RKA ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	E14
655906	60	GTG ...	VKD ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD Overlapping sORF Upstream	E14
532600	63	CTG ...	LCG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	v6-5
309227	198	TTG ...	LPA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	R1E
935074	60	ATG ...	MVQ ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	E14
728933	135	CTG ...	LHP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	R1E
80156	75	GTG ...	VGG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	v6-5
320285	111	CTG ...	LGI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	R1E
105144	294	GTG ...	VIR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	R1E
1582304	48	GTG ...	VMS ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
928906	48	ATG ...	MFA ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS NMD Overlapping sORF	Glioma, Liver, MEF, MESC
334085	225	GTG ...	VEE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	R1E
33309	132	GTG ...	VGG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	R1E
1154175	48	GTG ...	VGG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	v6-5
466825	66	GTG ...	VEA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF Upstream	E14
1852655	156	GTG ...	VYQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	R1E
35368	99	GTG ...	VVN ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	v6-5
662511	183	GTG ...	VYQ ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	R1E

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