Transcript 10183 | MetamORF

Transcript

ID CARD

MetamORF ID

10183

ENSMUST00000000080

Name

Klf6-201

Strand

Biotype

protein_coding

Start-end positions

5861482-5870394

CDS Start-stop positions

5861639-5867283

CDS Relative positions

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

NCBI:23849

Aliases

AI448727,
BCD1, C86813, Copeb,
CPBP, ENSMUSG00000000078, FM2,
FM6, Ierepo1, Ierepo3,
Klf6, MGI:1346318, NCBI:23849,
OFF:Klf6, R75280, Zf9

Chr 13

ORFs

64 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
10509	39	TTG ...	LTA ...	Ribo-seq	TTG	moderate	12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, R1E, Skin_tumor, v6-5
673223	45	GTG ...	VTG ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, MEF, NSC, v6-5
942949	84	ACG ...	TPP ...	Ribo-seq	ACG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
941983	72	ATG ...	MAE ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, MEF
941772	57	AGG ...	RRP ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
783078	138	CTG ...	LGR ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, E14, MEF, v6-5
465012	234	CTG ...	LLG ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, E14, MEF, Spleen_B_cell, v6-5
671894	54	CTG ...	LRE ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, E14, Neutrophil
1699263	72	GTG ...	VSM ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	MEF
670089	87	CTG ...	LMS ...	Ribo-seq	CTG	moderate	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, MEF, R1E, v6-5
338756	54	TTG ...	LHE ...	Ribo-seq	TTG	moderate	12	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, Brain, E14, MEF, Spleen_B_cell, v6-5
1611094	45	TTG ...	LLY ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	MEF
10182	63	TTG ...	LCT ...	Ribo-seq	TTG		14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, R1E, Skin_tumor, Spleen_B_cell, v6-5
670806	138	CTG ...	LFA ...	Ribo-seq	CTG	weak	8	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, MEF
670932	33	CTG ...	LPG ...	Ribo-seq	CTG	moderate	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, MEF, v6-5
944230	75	AAG ...	KLP ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
942359	75	AGG ...	RNY ...	Ribo-seq	AGG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
941872	102	GTG ...	VTR ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, MEF
10383	102	ATG ...	MCS ...	Ribo-seq	ATG		16	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, C2C12, E14, MEF, Neutrophil, NSC, Skin_tumor, Spleen_B_cell, v6-5
1698897	78	TTG ...	LAV ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	MEF
943787	219	ATC ...	IVH ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
942222	114	CTG ...	LGS ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, MEF, v6-5
941518	57	ATT ...	IHS ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
1698717	96	CTG ...	LRG ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Downstream sORF	MEF
464058	42	CTG ...	LSF ...	Ribo-seq	CTG	moderate	12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
673329	96	CTG ...	LQE ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, MEF, NSC, v6-5
943388	144	AGG ...	RKS ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
975839	54	AGG ...	RNF ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
462345	174	CTG ...	LLG ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, E14, MEF, Spleen_B_cell, v6-5
672870	75	GTG ...	VGS ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, Neutrophil
463662	162	CTG ...	LIV ...	Ribo-seq	CTG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, MEF, Spleen_B_cell, v6-5
670760	66	CTG ...	LWA ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, MEF, Neutrophil, R1E
1347384	90	ATG ...	MAT ...	Ribo-seq	ATG	strong	4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	BMDC, E14, Glioma, Liver, MEF, MESC
335141	33	GTG ...	VSP ...	Ribo-seq	GTG	moderate	13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, R1E, Spleen_B_cell, v6-5
941680	39	AAG ...	KVV ...	Ribo-seq	AAG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
670391	75	GTG ...	VSL ...	Ribo-seq	GTG	moderate	11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, MEF, R1E, v6-5
944284	135	AGG ...	RNY ...	Ribo-seq	AGG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
673521	72	GTG ...	VPS ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, MEF, v6-5
672220	39	ATG ...	MAA ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, NSC, v6-5
420693	57	ACG ...	TKR ...	Ribo-seq	ACG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, C2C12, MEF
668499	72	ATG ...	MGL ...	Ribo-seq	ATG	strong	12	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, Glioma, Liver, MEF, MESC, Neutrophil, R1E
420763	117	ACG ...	TKR ...	Ribo-seq	ACG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, C2C12, MEF
342204	123	TTG ...	LCT ...	Ribo-seq	TTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, R1E, v6-5
942520	123	ATG ...	MEG ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse Johnstone2016	Alternative Downstream sORF	BMDC, Glioma, Liver, MEF, MESC
1699097	129	GTG ...	VTP ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative Downstream sORF	MEF
944225	78	ATA ...	IPV ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
1699041	111	CTG ...	LVP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	MEF
784372	255	CTG ...	LRS ...	Ribo-seq	CTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, E14, MEF, v6-5
672321	33	GTG ...	VSG ...	Ribo-seq	GTG	moderate	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, MEF, Neutrophil, v6-5
942213	54	ATC ...	IGA ...	Ribo-seq	ATC	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
1346722	105	CTG ...	LVT ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, MEF
341881	162	ATG ...	MCS ...	Ribo-seq	ATG		14	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, C2C12, E14, Glioma, Liver, MEF, MESC, Spleen_B_cell, v6-5
420480	126	ATT ...	IAW ...	Ribo-seq	ATT	strong	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	C2C12, E14, MEF
944336	39	AGG ...	RRK ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
943558	42	ATC ...	IFR ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
1699307	66	ATG ...	MRT ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	MEF
1136115	123	GTG ...	VGP ...	Ribo-seq	GTG	strong	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, MEF, v6-5
672631	162	GTG ...	VGQ ...	Ribo-seq	GTG	strong	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, MEF
10260	66	GTG ...	VDQ ...	Ribo-seq	GTG	moderate	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, MEF, Skin_tumor, v6-5
1301630	132	ATA ...	IGK ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14
420557	84	ATG ...	MSA ...	Ribo-seq	ATG	weak	13	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, C2C12, E14, Glioma, Liver, MEF, MESC, R1E, v6-5
462468	195	CTG ...	LRS ...	Ribo-seq	CTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, E14, MEF, Spleen_B_cell, v6-5
464775	222	CTG ...	LIV ...	Ribo-seq	CTG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, MEF, Spleen_B_cell, v6-5
462258	63	CTG ...	LFS ...	Ribo-seq	CTG	weak	13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, MEF, Neutrophil, NSC, Spleen_B_cell

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