Metam
ORF

Logo

Transcript

Transcript

ID CARD

MetamORF ID

13702

ID

ENSMUST00000025083

Name

Kif5b-201

Strand

-

Biotype

protein_coding

Start-end positions

6201002-6241523

CDS Start-stop positions

6208205-6241107

CDS Relative positions

-

Sequences

Transcript sequence

TTT ...

Gene

ID

NCBI:16573

Aliases

AL022807,
ENSMUSG00000006740, Khc, Khcs,
Kif5b, Kns1, MGI:1098268,
NCBI:16573, OFF:Kif5b, Ukhc


Chr 18

ORFs

154 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

394894 84

GTG ...

VEA ...

Ribo-seq
GTG moderate 2 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
Brain
394467 114

CTG ...

LSG ...

Ribo-seq
CTG moderate 2 sORFs_org_Mouse
    Overlapping
    sORF
    Upstream
BMDC, Brain
399828 96

ATG ...

MLK ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
1199870 207

AAG ...

KQS ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
E14
397687 135

CTG ...

LSF ...

Ribo-seq
CTG weak 2 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
Brain, E14
484748 174

CTG ...

LPG ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14
400435 177

TTG ...

LSL ...

Ribo-seq
TTG 6 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
MEF, NSC, v6-5
1199618 177

AAG ...

KPS ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1543639 30

ATG ...

MKT ...

Ribo-seq
ATG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
396937 75

CTG ...

LLI ...

Ribo-seq
CTG weak 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF
1199189 42

GTG ...

VGA ...

Ribo-seq
GTG moderate 3 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
BMDC, Brain, E14
41053 135

CTG ...

LTT ...

Ribo-seq
CTG 9 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
E14, MEF, NSC,
Spleen_B_cell, Testis, v6-5
399355 240

TTG ...

LPF ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
1197181 51

AAG ...

KRR ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
486041 84

TTG ...

LPP ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    sORF
    Upstream
B_cell
392904 87

GTG ...

VLC ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
13701 39

ATG ...

MHL ...

Ribo-seq
ATG moderate 5 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
BMDC, E14, Glioma,
Liver, MEF, MESC,
R1E, Skin_tumor
392513 48

CTG ...

LCQ ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
394010 93

CTG ...

LKV ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
400553 66

TTG ...

LLN ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
1198576 63

AAG ...

KNF ...

Ribo-seq
AAG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
40100 45

TTG ...

LKT ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Testis
484793 207

GTG ...

VRA ...

Ribo-seq
GTG moderate 6 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, B_cell, E14,
MEF, Neutrophil, Spleen_B_cell
395979 81

CTG ...

LVV ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1544576 48

TTG ...

LVK ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
1456884 72

CTG ...

LHL ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
980998 30

GTG ...

VSL ...

Ribo-seq
GTG moderate 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, Liver, MEF
717349 90

TTG ...

LHM ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
41017 117

GTG ...

VLH ...

Ribo-seq
GTG 11 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
E14, MEF, NSC,
R1E, Spleen_B_cell, Testis,
v6-5
398744 186

GTG ...

VCS ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
1197270 87

ACG ...

TLS ...

Ribo-seq
ACG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
398855 126

CTG ...

LGL ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
395775 75

GTG ...

VLH ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
485563 60

GTG ...

VRE ...

Ribo-seq
GTG weak 3 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
BMDC, E14, Spleen_B_cell
397111 96

CTG ...

LQS ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14
1197251 51

AGG ...

RKL ...

Ribo-seq
AGG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
39598 93

CTG ...

LTT ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Testis
40864 114

CTG ...

LHR ...

Ribo-seq
CTG 10 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
E14, MEF, NSC,
R1E, Spleen_B_cell, Testis,
v6-5
486070 216

CTG ...

LGT ...

Ribo-seq
CTG strong 5 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, B_cell, MEF,
Neutrophil, Spleen_B_cell
400617 159

TTG ...

LQS ...

Ribo-seq
TTG 4 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
3T3, B_cell, Brain,
NSC
400478 105

ATG ...

MKS ...

Ribo-seq
ATG 5 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Glioma, Liver, MEF,
MESC, Spleen_B_cell
397034 60

ATG ...

MEQ ...

Ribo-seq
ATG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, v6-5
394450 33

ATG ...

MQI ...

Ribo-seq
ATG moderate 3 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
Brain, Glioma, Liver,
MEF, MESC, R1E
1499257 207

TTG ...

LSL ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, NSC
803560 51

CTG ...

LTS ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, E14, v6-5
959403 51

AAG ...

KPK ...

Ribo-seq
AAG moderate 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, E14
1199508 132

ACG ...

TTL ...

Ribo-seq
ACG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
399458 141

GTG ...

VIN ...

Ribo-seq
GTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, E14
1198821 84

CTG ...

LCW ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1156694 81

TTG ...

LFR ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
v6-5
1198123 72

AGG ...

RLI ...

Ribo-seq
AGG moderate 1 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
E14
395803 99

CTG ...

LGL ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
400511 126

CTG ...

LQS ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, E14
400183 153

TTG ...

LLL ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
958943 114

GTG ...

VEE ...

Ribo-seq
GTG 2 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
BMDC, E14
1155273 36

ATG ...

MIQ ...

Ribo-seq
ATG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
400281 129

CTG ...

LLQ ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
400402 120

CTG ...

LKV ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
400127 66

TTG ...

LEM ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, Brain
713510 45

ATG ...

MNI ...

Ribo-seq
ATG weak 2 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
3T3, Glioma, Liver,
MEF, MESC
394742 66

ATG ...

MIR ...

Ribo-seq
ATG moderate 3 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
E14, Glioma, Liver,
MEF, MESC
1456823 60

ATG ...

MSF ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
395459 78

ATG ...

MFL ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, v6-5
1197079 153

ATT ...

IWK ...

Ribo-seq
ATT 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
395199 39

TTG ...

LEM ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
1196871 63

AAG ...

KSE ...

Ribo-seq
AAG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1198138 63

ATC ...

IAS ...

Ribo-seq
ATC moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1200213 144

AGG ...

RST ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
399557 114

TTG ...

LRA ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
399207 198

ATG ...

MPL ...

Ribo-seq
ATG 2 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Glioma, Liver,
MEF, MESC
717433 168

CTG ...

LPR ...

Ribo-seq
CTG 5 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
3T3, B_cell, E14,
NSC, v6-5
959193 36

ATA ...

IMQ ...

Ribo-seq
ATA moderate 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, E14
486371 180

CTG ...

LAG ...

Ribo-seq
CTG moderate 5 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, B_cell, MEF,
Neutrophil, Spleen_B_cell
1199146 45

TTG ...

LKT ...

Ribo-seq
TTG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
400609 102

ATG ...

MEQ ...

Ribo-seq
ATG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, v6-5
1198465 147

AAG ...

KPS ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
393671 171

TTG ...

LTK ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
41114 126

CTG ...

LAA ...

Ribo-seq
CTG 9 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
E14, MEF, NSC,
Spleen_B_cell, Testis, v6-5
397051 63

CTG ...

LKE ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF
40491 33

GTG ...

VAG ...

Ribo-seq
GTG moderate 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, MEF, Testis
400524 141

GTG ...

VQK ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
400353 237

GTG ...

VKL ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
1456234 30

CTG ...

LWA ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
BMDC
400607 72

CTG ...

LRQ ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
1197367 66

ATG ...

MKK ...

Ribo-seq
ATG moderate 3 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
E14, Glioma, Liver,
MEF, MESC
1199838 189

AAG ...

KLI ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
958961 33

AAG ...

KTD ...

Ribo-seq
AAG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
958177 48

ACG ...

TEH ...

Ribo-seq
ACG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14
485284 57

TTG ...

LEG ...

Ribo-seq
TTG moderate 2 sORFs_org_Mouse
    sORF
    Upstream
B_cell, Neutrophil
1199073 48

ATC ...

III ...

Ribo-seq
ATC moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1197027 63

AGG ...

RLQ ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1196964 42

CTG ...

LRA ...

Ribo-seq
CTG moderate 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF
400623 141

CTG ...

LDS ...

Ribo-seq
CTG 5 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
3T3, BMDC, Brain,
E14, NSC
399274 192

TTG ...

LIV ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, v6-5
1198145 57

ATC ...

IRS ...

Ribo-seq
ATC moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
395032 66

ATG ...

MLK ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
399322 108

TTG ...

LSY ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
1196392 45

AAG ...

KKN ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1199918 183

ATT ...

IWK ...

Ribo-seq
ATT 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
393191 111

GTG ...

VIN ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
400561 93

CTG ...

LKE ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, E14
1197476 51

ACG ...

TPR ...

Ribo-seq
ACG moderate 1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14
40988 87

TTG ...

LKT ...

Ribo-seq
TTG 11 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
E14, MEF, Neutrophil,
NSC, R1E, Spleen_B_cell,
Testis, v6-5
399760 78

GTG ...

VKK ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
399434 129

GTG ...

VAT ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, MEF
1198673 42

ATG ...

MLL ...

Ribo-seq
ATG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
393609 90

CTG ...

LLS ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
395446 48

TTG ...

LHM ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
958204 57

ATA ...

IFL ...

Ribo-seq
ATA 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
39958 72

CTG ...

LHR ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Testis
399720 189

CTG ...

LLT ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, MEF,
NSC
1197300 159

AAG ...

KLI ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
958978 45

ATA ...

IKL ...

Ribo-seq
ATA moderate 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, E14
397285 105

TTG ...

LKR ...

Ribo-seq
TTG moderate 2 sORFs_org_Mouse
    Overlapping
    sORF
    Upstream
BMDC, Brain
1200190 120

AGG ...

RFR ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1199555 195

AAG ...

KRK ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
400049 201

TTG ...

LTK ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, E14
399144 111

CTG ...

LVV ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, E14
714114 180

ATG ...

MSS ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1499239 201

CTG ...

LTL ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, NSC
399765 42

ATG ...

MKG ...

Ribo-seq
ATG 2 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
Brain, Glioma, Liver,
MEF, MESC
39795 72

CTG ...

LWR ...

Ribo-seq
CTG moderate 4 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
BMDC, Brain, E14,
Testis
1196837 54

AAG ...

KQK ...

Ribo-seq
AAG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1199943 42

AAG ...

KTK ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
393122 72

TTG ...

LRA ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
1199366 102

ATG ...

MKL ...

Ribo-seq
ATG 2 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
E14, Glioma, Liver,
MEF, MESC
958494 159

CTG ...

LDS ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
BMDC, E14
1197976 165

AAG ...

KRK ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
41049 75

TTG ...

LNS ...

Ribo-seq
TTG 12 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
E14, MEF, Neutrophil,
NSC, R1E, Spleen_B_cell,
Testis, v6-5
1196474 90

ACG ...

TTL ...

Ribo-seq
ACG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1199832 111

CTG ...

LCW ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
39605 33

TTG ...

LNS ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, Testis
1197597 102

AGG ...

RST ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
400582 111

CTG ...

LQM ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, Spleen_B_cell
958354 54

AAG ...

KYT ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
1196553 75

ATG ...

MKL ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1197498 45

AAG ...

KKM ...

Ribo-seq
AAG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
959765 87

ATA ...

IFL ...

Ribo-seq
ATA 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, E14
1199452 75

AAG ...

KKN ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1197887 30

AAG ...

KKS ...

Ribo-seq
AAG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
392699 87

TTG ...

LSS ...

Ribo-seq
TTG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
959792 156

ATA ...

ILL ...

Ribo-seq
ATA 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, E14
959260 126

ATA ...

ILL ...

Ribo-seq
ATA 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14
399256 114

GTG ...

VLC ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
400274 120

ATG ...

MFL ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, v6-5
958560 42

ATG ...

MKS ...

Ribo-seq
ATG weak 3 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
BMDC, E14, Glioma,
Liver, MEF, MESC
1197776 99

TTG ...

LFR ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
E14
959842 96

GTG ...

VEE ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
BMDC, E14, NSC,
v6-5
1199821 210

ATG ...

MSS ...

Ribo-seq
ATG 2 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
E14, Glioma, Liver,
MEF, MESC
959424 45

ATT ...

IIK ...

Ribo-seq
ATT moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
959874 156

AAG ...

KYT ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
398164 90

CTG ...

LRS ...

Ribo-seq
CTG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
398900 213

TTG ...

LMS ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
399477 78

ATG ...

MSL ...

Ribo-seq
ATG 4 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
Brain, E14, Glioma,
Liver, MEF, MESC

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5