Transcript 37640 | MetamORF

Transcript

ID CARD

MetamORF ID

37640

ENSMUST00000007814

Name

Khsrp-201

Strand

Biotype

protein_coding

Start-end positions

57021058-57031507

CDS Start-stop positions

57022693-57031399

CDS Relative positions

Sequences

Transcript sequence

ATC ...

Genome browsers

UCSC

Gene

NCBI:16549

Aliases

6330409F21Rik,
ENSMUSG00000007670, Fbp2, Fubp2,
Khsrp, Ksrp, MGI:1336214,
NCBI:16549, OFF:Khsrp

Chr 17

ORFs

99 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
481947	183	GTG ...	VRE ...	Ribo-seq	GTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, R1E, Spleen_B_cell
478584	66	GTG ...	VTK ...	Ribo-seq	GTG		11	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
1194568	78	AAG ...	KWE ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
483384	96	ATG ...	MET ...	Ribo-seq	ATG		8	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, B_cell, E14, Glioma, Liver, MEF, MESC, Neutrophil, R1E, Spleen_B_cell
481827	72	GTG ...	VVA ...	Ribo-seq	GTG	strong	9	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, R1E, Spleen_B_cell, v6-5
483300	123	TTG ...	LGA ...	Ribo-seq	TTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, E14, R1E, Spleen_B_cell
483315	159	CTG ...	LAA ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, R1E, Spleen_B_cell
37639	147	GTG ...	VNT ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, Spleen_B_cell, Testis
479702	48	CTG ...	LGP ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, NSC, Spleen_B_cell
483415	90	CTG ...	LGS ...	Ribo-seq	CTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell
481394	93	ATG ...	MTS ...	Ribo-seq	ATG	weak	13	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
482381	51	TTG ...	LGT ...	Ribo-seq	TTG		10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
480975	198	ATG ...	MGP ...	Ribo-seq	ATG	strong	7	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Brain, E14, R1E, Spleen_B_cell
483367	231	ATG ...	MPV ...	Ribo-seq	ATG		6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, R1E, Spleen_B_cell
1195316	69	AGG ...	RTQ ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
701732	60	TTG ...	LWK ...	Ribo-seq	TTG	weak	6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, MEF, R1E, v6-5
482837	57	GTG ...	VAL ...	Ribo-seq	GTG		10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, MEF, NSC, R1E, Spleen_B_cell, v6-5
705032	186	CTG ...	LIT ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14
702632	165	CTG ...	LSI ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, R1E
480006	39	TTG ...	LQP ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF, Neutrophil, R1E, Spleen_B_cell
484415	78	TTG ...	LGT ...	Ribo-seq	TTG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
710217	36	GTG ...	VGW ...	Ribo-seq	GTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, MEF, v6-5
484390	42	GTG ...	VER ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, MEF, Spleen_B_cell, v6-5
1194181	69	CTG ...	LPP ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, R1E
481540	60	CTG ...	LGA ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Spleen_B_cell
954708	276	AAG ...	KPV ...	Ribo-seq	AAG		2	sORFs_org_Mouse	Overlapping sORF Upstream	BMDC, E14
481974	69	GTG ...	VAP ...	Ribo-seq	GTG	strong	7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, MEF, R1E, Spleen_B_cell, v6-5
479364	72	CTG ...	LAC ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell
483496	225	GTG ...	VCA ...	Ribo-seq	GTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, R1E, Spleen_B_cell
1359767	114	GTG ...	VAH ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14
1627088	57	GTG ...	VSR ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative Downstream sORF	MEF
954908	153	ATC ...	IGV ...	Ribo-seq	ATC	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
481084	30	GTG ...	VWS ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	sORF Upstream	3T3, BMDC, R1E, Spleen_B_cell
1192447	147	AGG ...	RLL ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
479710	54	CTG ...	LGS ...	Ribo-seq	CTG		8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, NSC, R1E, Spleen_B_cell
478616	123	CTG ...	LAA ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, R1E, Spleen_B_cell
1193232	48	ACG ...	TTT ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
482795	105	GTG ...	VEE ...	Ribo-seq	GTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, R1E, Spleen_B_cell
1627871	48	GTG ...	VGA ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative Downstream sORF	MEF
483857	135	CTG ...	LIL ...	Ribo-seq	CTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, E14, MEF, R1E, Spleen_B_cell
1190128	75	AGG ...	RQV ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1192025	30	ATA ...	IGF ...	Ribo-seq	ATA	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
482655	30	ATG ...	MGT ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, Brain, Glioma, Liver, MEF, MESC, Spleen_B_cell, v6-5
956831	135	ACG ...	TDR ...	Ribo-seq	ACG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
481073	123	ATG ...	MTS ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, E14, Spleen_B_cell
483303	102	GTG ...	VAA ...	Ribo-seq	GTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell
484000	126	CTG ...	LTD ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, R1E, Spleen_B_cell
484179	48	TTG ...	LVL ...	Ribo-seq	TTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, E14, R1E, Spleen_B_cell
483340	93	GTG ...	VTK ...	Ribo-seq	GTG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
1194304	93	AGG ...	RTV ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
711857	132	CTG ...	LTG ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, MEF, NSC, R1E, v6-5
705178	39	ATG ...	MNT ...	Ribo-seq	ATG		5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF
1191432	87	AGG ...	RDS ...	Ribo-seq	AGG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1191281	33	AGG ...	RGD ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
702937	177	GTG ...	VLP ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, R1E
481997	66	GTG ...	VAA ...	Ribo-seq	GTG		8	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, E14, NSC, R1E, Spleen_B_cell
706604	210	CTG ...	LEH ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14
957450	42	ATA ...	ISV ...	Ribo-seq	ATA		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
1542316	222	CTG ...	LVG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1190211	117	CTG ...	LVA ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14
481116	177	TTG ...	LLT ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, R1E, Spleen_B_cell
1193491	159	ATT ...	ITD ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
386862	69	ATG ...	MAP ...	Ribo-seq	ATG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, R1E, v6-5
391589	66	ATG ...	MWT ...	Ribo-seq	ATG		13	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
479351	201	ATG ...	MMG ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, R1E, Spleen_B_cell
1191957	129	AGG ...	RPW ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
484338	243	CTG ...	LAA ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E, Spleen_B_cell
483691	66	ATG ...	MNT ...	Ribo-seq	ATG		13	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, Spleen_B_cell, v6-5
1193609	30	ATA ...	IRI ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
701652	144	CTG ...	LLT ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14
1190795	141	ACG ...	TQP ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1194936	75	ACG ...	TPS ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
483526	51	TTG ...	LVK ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, MEF, NSC, Spleen_B_cell, v6-5
484217	129	TTG ...	LAL ...	Ribo-seq	TTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, E14, MEF, R1E, Spleen_B_cell
1190494	42	ACG ...	TPM ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1191261	60	AGG ...	RPR ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
391476	84	ATG ...	MAP ...	Ribo-seq	ATG		16	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, R1E, Spleen_B_cell, v6-5
483819	141	GTG ...	VEE ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, R1E, Spleen_B_cell
1190270	36	AAG ...	KSI ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
483721	84	GTG ...	VAL ...	Ribo-seq	GTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
796378	33	GTG ...	VVA ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC
708558	174	CTG ...	LPG ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, R1E
481323	207	CTG ...	LAA ...	Ribo-seq	CTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, R1E, Spleen_B_cell
1195770	204	AAG ...	KMM ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
478395	99	GTG ...	VGP ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Spleen_B_cell
1193177	39	ACG ...	TPS ...	Ribo-seq	ACG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
800537	168	TTG ...	LSP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
386849	51	ATG ...	MWT ...	Ribo-seq	ATG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
386124	30	GTG ...	VAS ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain
482786	186	CTG ...	LRR ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, R1E, Spleen_B_cell
704488	198	CTG ...	LAP ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14
1542787	126	CTG ...	LQC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
484139	234	ATG ...	MMP ...	Ribo-seq	ATG		8	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Glioma, Liver, MEF, MESC, R1E, Spleen_B_cell
702220	69	GTG ...	VGT ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, R1E
1191806	39	AGG ...	RTQ ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
483374	219	GTG ...	VRE ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E, Spleen_B_cell
800140	138	CTG ...	LPL ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, MEF, R1E, v6-5
702883	36	ATG ...	MGV ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, MEF, NSC, R1E, v6-5
1357973	30	TTG ...	LGR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14

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