Transcript 1121548

Transcript

ID CARD

MetamORF ID

1121548

ENSMUST00000186128

Name

Kdm5b-205

Strand

Biotype

retained_intron

Start-end positions

134587977-134590686

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TAC ...

Genome browsers

UCSC

Gene

NCBI:75605

Aliases

2010009J12Rik,
2210016I17Rik, AW556288, D1Ertd202e,
ENSMUSG00000042207, Jarid1b, Kdm5b,
MGI:1922855, mKIAA4034, NCBI:75605,
OFF:Kdm5b, PLU-1, Plu1,
PUT1, Rb-Bp2, RBBP2H1A

Chr 1

ORFs

11 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
678291	42	ATG ...	MDQ ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse	Intronic sORF	E14, MEF, v6-5
743951	153	GTG ...	VGL ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Intronic sORF	E14, NSC, v6-5
729730	111	TTG ...	LPP ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Intronic sORF	E14, NSC, v6-5
716046	78	CTG ...	LWA ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	E14, NSC, v6-5
649453	147	TTG ...	LQL ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Intronic sORF	E14, NSC, v6-5
728055	51	ATG ...	MSE ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Intronic sORF	E14, NSC, v6-5
651603	93	TTG ...	LLL ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Intronic sORF	E14, NSC, v6-5
715382	87	CTG ...	LVK ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	E14, NSC, v6-5
720200	141	TTG ...	LFA ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Intronic sORF	E14, NSC, v6-5
1363068	114	GTG ...	VGS ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Intronic sORF	E14
1121547	60	TTG ...	LLL ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	v6-5

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