Transcript 36088 | MetamORF

Transcript

ID CARD

MetamORF ID

36088

ENSMUST00000150858

Name

Kctd20-205

Strand

Biotype

processed_transcript

Start-end positions

28952503-28967092

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCG ...

Genome browsers

UCSC

Gene

NCBI:66989

Aliases

2410004N11Rik,
AI451943, AW541186, D17Ertd562e,
ENSMUSG00000005936, Kctd20, MGI:1914239,
NCBI:66989, OFF:Kctd20

Chr 17

ORFs

16 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1412490	153	GTG ...	VGC ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
1411243	54	GTG ...	VVN ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
37878	39	ATG ...	MPL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Liver
35975	45	TTG ...	LTM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
390017	183	GTG ...	VAG ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Spleen_B_cell
1410572	165	CTG ...	LPI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
1410618	171	CTG ...	LIL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
391113	150	GTG ...	VSE ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Spleen_B_cell
1412106	66	CTG ...	LLF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
37985	51	TTG ...	LHL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
1412282	153	GTG ...	VPE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
38392	60	GTG ...	VAS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
36087	66	TTG ...	LEV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
1412033	72	GTG ...	VDG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
1411746	228	CTG ...	LHE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
1411390	84	GTG ...	VTL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Liver

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