Transcript 62003 | MetamORF

Transcript

ID CARD

MetamORF ID

62003

ENSMUST00000134532

Name

Kctd10-206

Strand

Biotype

nonsense_mediated_decay

Start-end positions

114364462-114380489

CDS Start-stop positions

114368942-114380428

CDS Relative positions

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

NCBI:330171

Aliases

AW536343,
C87062, ENSMUSG00000001098, Kctd10,
mBACURD3, MGI:2141207, NCBI:330171,
OFF:Kctd10

Chr 5

ORFs

46 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
63317	78	TTG ...	LGQ ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, B_cell, Brain, Testis
565937	54	CTG ...	LPP ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, MEF
63707	180	TTG ...	LLY ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Downstream NMD sORF	3T3, Brain, MEF, Neutrophil, Testis
174995	54	GTG ...	VRR ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Downstream NMD sORF	3T3, Brain, MEF, NSC
181935	45	CTG ...	LLY ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, MEF, Neutrophil, NSC
62385	180	GTG ...	VKL ...	Ribo-seq	GTG		4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	B_cell, Brain, Neutrophil, Testis
561548	30	CTG ...	LKP ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, B_cell, MEF
977403	135	ACG ...	TLT ...	Ribo-seq	ACG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF
184807	30	CTG ...	LLY ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, MEF
832781	54	CTG ...	LPL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	B_cell, MEF
173806	51	GTG ...	VKL ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, MEF, Neutrophil, NSC
561387	42	CTG ...	LLL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, MEF
1784702	132	CTG ...	LAS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	CDS NMD sORF	MEF
63378	255	GTG ...	VVS ...	Ribo-seq	GTG		6	sORFs_org_Mouse	InCDS NMD Overlapping sORF	B_cell, Brain, MEF, Neutrophil, Testis
170766	39	CTG ...	LLV ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, MEF
560828	36	TTG ...	LET ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	3T3, B_cell, MEF, Neutrophil
64054	177	CTG ...	LYE ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	Downstream NMD sORF	3T3, B_cell, Brain, MEF, Neutrophil, Testis
62995	33	CTG ...	LRA ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, B_cell, Testis
177115	117	CTG ...	LQA ...	Ribo-seq	CTG		5	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, B_cell, Brain, MEF, v6-5
1686554	66	ATG ...	MQI ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Downstream NMD sORF	Glioma, Liver, MEF, MESC
1786719	111	CTG ...	LKA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	CDS NMD sORF	MEF
64956	174	CTG ...	LNV ...	Ribo-seq	CTG		4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	B_cell, Brain, Neutrophil, Testis
1686134	72	GTG ...	VGM ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Downstream NMD sORF	MEF
1686810	42	GTG ...	VFR ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Downstream NMD sORF	MEF
65190	111	CTG ...	LKA ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, MEF, Testis
568817	63	CTG ...	LWE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, MEF
522296	99	CTG ...	LTM ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3
520864	93	ATG ...	MPS ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, B_cell
570486	36	TTG ...	LVI ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, MEF
563981	51	GTG ...	VGH ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, B_cell, MEF
66296	252	GTG ...	VSS ...	Ribo-seq	GTG		5	sORFs_org_Mouse	InCDS NMD Overlapping sORF	B_cell, Brain, MEF, Neutrophil, Testis
520611	111	ATG ...	MAE ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse Johnstone2016	Alternative Downstream NMD sORF	3T3, B_cell, Glioma, Liver, MEF, MESC
521594	63	CTG ...	LDV ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, B_cell, MEF
560582	39	TTG ...	LSS ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, MEF
62882	189	CTG ...	LNI ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Downstream NMD sORF	3T3, B_cell, Brain, MEF, Neutrophil, Testis
561415	63	CTG ...	LQG ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	CDS NMD sORF	3T3, MEF
1686102	60	ATG ...	MYF ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
65374	168	GTG ...	VGG ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	B_cell, Neutrophil, Testis
561883	99	TTG ...	LTA ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, B_cell, MEF, v6-5
63883	90	GTG ...	VGS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, B_cell, Testis
62002	135	CTG ...	LEA ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Downstream NMD sORF	3T3, B_cell, Brain, MEF, Neutrophil, Testis
62973	96	CTG ...	LDE ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Downstream NMD sORF	3T3, Brain, MEF, Neutrophil, Testis
1686316	84	CTG ...	LQN ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Downstream NMD sORF	MEF
563479	45	GTG ...	VYP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, B_cell
66174	240	GTG ...	VPA ...	Ribo-seq	GTG		5	sORFs_org_Mouse	InCDS NMD Overlapping sORF	B_cell, Brain, MEF, Neutrophil, Testis
176044	57	CTG ...	LKS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Downstream NMD sORF	3T3, MEF

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