Transcript 126772

Transcript

ID CARD

MetamORF ID

126772

ENSMUST00000157045

Name

Jtb-204

Strand

Biotype

retained_intron

Start-end positions

90231634-90235419

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGC ...

Genome browsers

UCSC

Gene

NCBI:23922

Aliases

ENSMUSG00000027937,
Gm622, Jtb, MGI:1346082,
NCBI:23922, OFF:Jtb

Chr 3

ORFs

19 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
130360	48	ATG ...	MDY ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, MEF, Spleen_B_cell, v6-5
53399	42	CTG ...	LEP ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
130339	48	GTG ...	VWF ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
134917	51	GTG ...	VEK ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, MEF
128833	72	CTG ...	LRT ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, MEF
507015	72	GTG ...	VPG ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Intronic sORF	3T3, Neutrophil, Spleen_B_cell
132223	135	CTG ...	LLG ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
133863	42	ATG ...	MAA ...	Ribo-seq	ATG	strong	6	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, MEF, Neutrophil, Spleen_B_cell
1172919	48	CTG ...	LWS ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	MEF, v6-5
53971	63	CTG ...	LAS ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, MEF
130574	165	TTG ...	LAQ ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
1172327	30	GTG ...	VRE ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	v6-5
133327	39	CTG ...	LKS ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Intronic sORF	3T3, Brain, MEF, Spleen_B_cell, v6-5
136619	33	ATG ...	MLV ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
138061	30	CTG ...	LCA ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	Brain, E14, Spleen_B_cell
126771	87	CTG ...	LTA ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, Spleen_B_cell
127067	33	CTG ...	LLC ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	Brain, E14, Spleen_B_cell, v6-5
140719	54	GTG ...	VAS ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Intronic sORF	Brain
131820	30	TTG ...	LVG ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Intronic sORF	Brain, v6-5

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