Transcript 5673 | MetamORF

Transcript

ID CARD

MetamORF ID

5673

ENSMUST00000149116

Name

Itgb1-204

Strand

Biotype

protein_coding

Start-end positions

128724333-128732389

CDS Start-stop positions

-128727057

CDS Relative positions

Sequences

Transcript sequence

ATT ...

Genome browsers

UCSC

Gene

NCBI:16412

Aliases

4633401G24Rik,
AA409975, AA960159, CD29,
ENSMUSG00000025809, Fnrb, Gm9863,
gpIIa, Itgb1, MGI:96610,
NCBI:16412, OFF:Itgb1

Chr 8

ORFs

18 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1265199	48	AGG ...	RRR ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	sORF	E14
240618	30	GTG ...	VKI ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	sORF	Brain
919469	42	AGG ...	RTL ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	sORF	E14
606278	36	TTG ...	LMT ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF	3T3
246713	42	CTG ...	LLV ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	sORF	Brain, Liver
416752	159	ATG ...	MAT ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	C2C12, E14
240651	39	CTG ...	LVL ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	sORF	3T3, Brain, E14, Liver
920252	75	AGG ...	RRG ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	sORF	E14
81272	39	TTG ...	LLE ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	sORF	3T3, Brain, Testis
246340	111	CTG ...	LSY ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	sORF	Brain, E14, Liver
5672	39	GTG ...	VTT ...	Ribo-seq	GTG	moderate	7	sORFs_org_Mouse	sORF	3T3, Brain, E14, Liver, Skin_tumor, Testis
80856	30	GTG ...	VVN ...	Ribo-seq	GTG	strong	4	sORFs_org_Mouse	sORF	Brain, Liver, Testis
1261459	48	AAG ...	KSA ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	sORF	E14
1261586	54	ATT ...	IYK ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	sORF	E14
238360	42	ATG ...	MTE ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	sORF	3T3, Brain, E14, MEF
1106324	33	ATG ...	MTA ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	sORF	E14, v6-5
244414	36	CTG ...	LEL ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	sORF	3T3, Brain, E14
247868	30	TTG ...	LFL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	sORF	Brain

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