Metam
ORF

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Transcript

Transcript

ID CARD

MetamORF ID

235778

ID

ENSMUST00000124826

Name

Itgb1-202

Strand

+

Biotype

nonsense_mediated_decay

Start-end positions

128685757-128732617

CDS Start-stop positions

128705413-128713231

CDS Relative positions

-

Sequences

Transcript sequence

CAC ...

Gene

ID

NCBI:16412

Aliases

4633401G24Rik,
AA409975, AA960159, CD29,
ENSMUSG00000025809, Fnrb, Gm9863,
gpIIa, Itgb1, MGI:96610,
NCBI:16412, OFF:Itgb1


Chr 8

ORFs

131 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1262182 87

AAG ...

KCN ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Downstream
    NMD
    sORF
E14
881067 39

GTG ...

VHR ...

Ribo-seq
GTG weak 1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
Liver
241105 54

CTG ...

LEN ...

Ribo-seq
CTG strong 3 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
E14, Liver, v6-5
5460 111

GTG ...

VCT ...

Ribo-seq
GTG weak 2 sORFs_org_Mouse
    Downstream
    NMD
    sORF
B_cell, R1E
1105998 33

GTG ...

VTV ...

Ribo-seq
GTG weak 1 sORFs_org_Mouse
    Downstream
    NMD
    sORF
Brain
1264417 177

ATC ...

ILV ...

Ribo-seq
ATC 1 sORFs_org_Mouse
    Downstream
    NMD
    sORF
E14
5593 87

TTG ...

LLV ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    Downstream
    NMD
    sORF
Brain, Liver, R1E
247711 180

GTG ...

VLS ...

Ribo-seq
GTG 6 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
B_cell, Brain, Liver,
R1E
1263980 243

ACG ...

TCA ...

Ribo-seq
ACG 1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
E14
244437 54

TTG ...

LFY ...

Ribo-seq
TTG moderate 3 sORFs_org_Mouse
    Downstream
    NMD
    sORF
Brain, E14, R1E
5076 84

TTG ...

LVS ...

Ribo-seq
TTG 4 sORFs_org_Mouse
    Downstream
    NMD
    sORF
B_cell, Brain, Liver,
R1E
1265379 66

AGG ...

RAK ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
E14
416798 66

AAG ...

KGW ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
C2C12
430189 36

GTG ...

VHR ...

Ribo-seq
GTG weak 2 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
Liver, R1E
239458 81

TTG ...

LLE ...

Ribo-seq
TTG moderate 3 sORFs_org_Mouse
    Downstream
    NMD
    sORF
Brain, E14, R1E
240439 42

ATG ...

MMD ...

Ribo-seq
ATG weak 1 sORFs_org_Mouse
    Downstream
    NMD
    sORF
R1E
247304 117

ATG ...

MEN ...

Ribo-seq
ATG strong 3 sORFs_org_Mouse
Johnstone2016
    Alternative
    Downstream
    NMD
    sORF
E14, Glioma, Liver,
MEF, MESC, v6-5
988297 48

GTG ...

VQL ...

Ribo-seq
GTG weak 1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
Liver
432191 117

ATG ...

MAS ...

Ribo-seq
ATG 1 Johnstone2016
    Alternative
    Downstream
    NMD
    sORF
Glioma, Liver, MEF,
MESC
603538 282

GTG ...

VEK ...

Ribo-seq
GTG 7 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
3T3, B_cell, Brain,
Liver, R1E
248262 132

CTG ...

LGF ...

Ribo-seq
CTG 8 sORFs_org_Mouse
    Downstream
    NMD
    sORF
B_cell, Brain, E14,
Liver, R1E
1264463 66

AAG ...

KFQ ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
E14
881161 99

TTG ...

LQA ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Downstream
    NMD
    sORF
Liver
1029420 141

TTG ...

LLL ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
Brain, R1E
238360 42

ATG ...

MTE ...

Ribo-seq
ATG weak 1 Johnstone2016
    Downstream
    NMD
    sORF
Glioma, Liver, MEF,
MESC
80856 30

GTG ...

VVN ...

Ribo-seq
GTG strong 1 sORFs_org_Mouse
    Downstream
    NMD
    sORF
B_cell
429301 69

TTG ...

LQE ...

Ribo-seq
TTG weak 1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
Liver
1261780 195

AGG ...

REK ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
E14
1261210 153

AGG ...

RNV ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
E14
1262461 189

AAG ...

KLP ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
E14
243362 138

CTG ...

LLV ...

Ribo-seq
CTG 6 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
Brain, Liver, R1E,
v6-5
1264590 60

AAG ...

KEK ...

Ribo-seq
AAG strong 1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
E14
5672 39

GTG ...

VTT ...

Ribo-seq
GTG moderate 3 sORFs_org_Mouse
    Downstream
    NMD
    sORF
B_cell, Brain, R1E
754348 186

TTG ...

LPQ ...

Ribo-seq
TTG 5 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
B_cell, Brain, Liver,
R1E
242135 36

ATG ...

MSD ...

Ribo-seq
ATG moderate 1 Johnstone2016
    Alternative
    Downstream
    NMD
    sORF
Glioma, Liver, MEF,
MESC
1264175 102

ATT ...

ICE ...

Ribo-seq
ATT 1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
E14
1262802 81

AAG ...

KCT ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
E14
79849 48

ATG ...

MSS ...

Ribo-seq
ATG weak 2 sORFs_org_Mouse
Johnstone2016
    Alternative
    Downstream
    NMD
    sORF
Brain, Glioma, Liver,
MEF, MESC
242818 66

GTG ...

VNA ...

Ribo-seq
GTG weak 2 sORFs_org_Mouse
    Downstream
    NMD
    sORF
Brain, Liver
1030338 105

GTG ...

VGT ...

Ribo-seq
GTG 2 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
Brain
241022 72

GTG ...

VFV ...

Ribo-seq
GTG moderate 2 sORFs_org_Mouse
    Downstream
    NMD
    sORF
E14, Liver
615551 75

ATG ...

MGQ ...

Ribo-seq
ATG 1 Johnstone2016
    Downstream
    NMD
    sORF
Glioma, Liver, MEF,
MESC
237271 270

GTG ...

VMP ...

Ribo-seq
GTG 7 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
B_cell, Brain, Liver,
R1E
756987 51

TTG ...

LLI ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    Overlapping
    sORF
B_cell, R1E
5534 114

CTG ...

LTE ...

Ribo-seq
CTG 7 sORFs_org_Mouse
    Downstream
    NMD
    sORF
B_cell, Brain, E14,
Liver, R1E
919048 75

ATC ...

ILL ...

Ribo-seq
ATC weak 1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
E14
1265771 180

AAG ...

KGC ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
E14
988761 42

TTG ...

LSK ...

Ribo-seq
TTG weak 1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
Liver
5583 93

ATG ...

MNL ...

Ribo-seq
ATG 5 sORFs_org_Mouse
    Downstream
    NMD
    sORF
B_cell, Brain, Liver,
R1E
1446018 63

ATG ...

MYF ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
R1E
1265314 147

ATC ...

ICS ...

Ribo-seq
ATC 1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
E14
755560 174

GTG ...

VVA ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
B_cell, Brain, R1E
920110 162

ACG ...

TLT ...

Ribo-seq
ACG weak 1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
E14
1030674 141

ATG ...

MLT ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
Brain, R1E
5804 132

ATG ...

MCL ...

Ribo-seq
ATG 1 Johnstone2016
    Downstream
    NMD
    sORF
Glioma, Liver, MEF,
MESC
246935 237

TTG ...

LQE ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
B_cell, Brain, R1E
81403 84

ATG ...

MSP ...

Ribo-seq
ATG 3 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
B_cell, E14, R1E
239487 72

ATG ...

MGN ...

Ribo-seq
ATG strong 3 sORFs_org_Mouse
    Downstream
    NMD
    sORF
Brain, E14, R1E
1264874 168

AGG ...

RKE ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
E14
1264065 57

ATC ...

IPI ...

Ribo-seq
ATC moderate 1 sORFs_org_Mouse
    Downstream
    NMD
    sORF
E14
243942 42

GTG ...

VAL ...

Ribo-seq
GTG 2 sORFs_org_Mouse
    Downstream
    NMD
    sORF
Brain, Liver
239114 36

TTG ...

LMQ ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Downstream
    NMD
    sORF
Liver
81640 87

TTG ...

LRR ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
B_cell
236395 51

CTG ...

LDW ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
B_cell, C2C12, E14,
R1E
238149 60

GTG ...

VVL ...

Ribo-seq
GTG moderate 3 sORFs_org_Mouse
    Downstream
    NMD
    sORF
Brain, E14, R1E
5369 36

GTG ...

VIT ...

Ribo-seq
GTG moderate 1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
Liver
5078 165

GTG ...

VNK ...

Ribo-seq
GTG 5 sORFs_org_Mouse
    Downstream
    NMD
    sORF
Brain, Liver, R1E
5414 99

GTG ...

VLP ...

Ribo-seq
GTG moderate 2 sORFs_org_Mouse
    Downstream
    NMD
    sORF
3T3, B_cell
239478 132

GTG ...

VFS ...

Ribo-seq
GTG 6 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
Brain, E14, Liver,
R1E
237211 189

TTG ...

LKK ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
B_cell, E14, R1E
757195 135

CTG ...

LIW ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
B_cell, R1E
1261896 63

ATC ...

IPA ...

Ribo-seq
ATC 1 sORFs_org_Mouse
    Downstream
    NMD
    sORF
E14
248279 108

GTG ...

VSV ...

Ribo-seq
GTG moderate 1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
v6-5
757509 174

GTG ...

VQV ...

Ribo-seq
GTG 6 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
B_cell, Brain, E14,
Liver, R1E
237736 45

CTG ...

LAV ...

Ribo-seq
CTG strong 3 sORFs_org_Mouse
    Downstream
    NMD
    sORF
B_cell, Brain, E14
429338 33

ATG ...

MLS ...

Ribo-seq
ATG weak 1 Johnstone2016
    Alternative
    Downstream
    NMD
    sORF
Glioma, Liver, MEF,
MESC
416640 183

AAG ...

KKG ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
C2C12
918112 51

ATT ...

ITL ...

Ribo-seq
ATT weak 1 sORFs_org_Mouse
    Downstream
    NMD
    sORF
E14
239858 123

TTG ...

LIP ...

Ribo-seq
TTG 5 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
Brain, Liver, R1E
236320 33

ATG ...

MQS ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Downstream
    NMD
    sORF
Liver
5644 66

CTG ...

LET ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    Downstream
    NMD
    sORF
B_cell, Brain, Liver
918268 144

AGG ...

RSF ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
E14
5365 174

GTG ...

VKT ...

Ribo-seq
GTG moderate 2 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
E14, v6-5
5642 36

CTG ...

LQE ...

Ribo-seq
CTG weak 3 sORFs_org_Mouse
    Downstream
    NMD
    sORF
B_cell, Brain, R1E
881544 219

GTG ...

VCR ...

Ribo-seq
GTG 6 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
Brain, Liver, R1E
235777 102

GTG ...

VDS ...

Ribo-seq
GTG moderate 1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
Brain
1029465 102

GTG ...

VNG ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
Brain
610462 72

CTG ...

LLI ...

Ribo-seq
CTG weak 1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
3T3
754675 78

ATG ...

MYT ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
B_cell, E14
239498 135

CTG ...

LVF ...

Ribo-seq
CTG 6 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
Brain, Liver, R1E,
v6-5
1262638 102

AGG ...

RKR ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
E14
1520256 39

ATG ...

MDN ...

Ribo-seq
ATG strong 1 sORFs_org_Mouse
    Downstream
    NMD
    sORF
R1E
5563 96

CTG ...

LEE ...

Ribo-seq
CTG moderate 3 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
Brain, E14, R1E
241697 66

ATG ...

MKF ...

Ribo-seq
ATG weak 2 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
Brain, Liver
919013 147

AAG ...

KRT ...

Ribo-seq
AAG moderate 1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
E14
1822655 138

CTG ...

LLI ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
R1E
246338 48

CTG ...

LEN ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
Brain, R1E
249888 165

CTG ...

LIG ...

Ribo-seq
CTG 6 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
Brain, E14, Liver,
R1E
430033 69

CTG ...

LFF ...

Ribo-seq
CTG weak 2 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
Brain, E14
918492 54

ATT ...

IAR ...

Ribo-seq
ATT moderate 1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
E14
430559 84

GTG ...

VFS ...

Ribo-seq
GTG moderate 2 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
B_cell, Liver
246340 111

CTG ...

LSY ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
Brain
606935 39

GTG ...

VHV ...

Ribo-seq
GTG moderate 2 sORFs_org_Mouse
    Downstream
    NMD
    sORF
E14, Liver
240802 78

CTG ...

LEM ...

Ribo-seq
CTG moderate 2 sORFs_org_Mouse
    Downstream
    NMD
    sORF
Brain, R1E
242437 93

CTG ...

LGF ...

Ribo-seq
CTG strong 3 sORFs_org_Mouse
    Downstream
    NMD
    sORF
Brain, R1E, v6-5
1265197 120

ATT ...

IPK ...

Ribo-seq
ATT 1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
E14
1263419 123

ACG ...

TDA ...

Ribo-seq
ACG 1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
E14
920263 114

ATT ...

IVK ...

Ribo-seq
ATT 1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
E14
249956 156

TTG ...

LDT ...

Ribo-seq
TTG 9 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
B_cell, Brain, E14,
Liver, R1E, v6-5
1263813 81

ACG ...

TTA ...

Ribo-seq
ACG moderate 1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
E14
1029598 42

CTG ...

LLL ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
Brain
80179 111

ATG ...

MFK ...

Ribo-seq
ATG 4 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
B_cell, C2C12, E14,
R1E
246244 93

GTG ...

VCV ...

Ribo-seq
GTG moderate 1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
v6-5
241639 66

ATG ...

MPN ...

Ribo-seq
ATG 3 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
B_cell, C2C12, E14
241135 63

GTG ...

VKI ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
Brain, Liver
238982 198

GTG ...

VNS ...

Ribo-seq
GTG 9 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
3T3, B_cell, Brain,
C2C12, E14, Liver,
R1E, v6-5
1028915 159

GTG ...

VTH ...

Ribo-seq
GTG 5 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
Brain, E14, Liver,
R1E
1262059 186

ATA ...

ITA ...

Ribo-seq
ATA 1 sORFs_org_Mouse
    Downstream
    NMD
    sORF
E14
1106324 33

ATG ...

MTA ...

Ribo-seq
ATG weak 1 Johnstone2016
    Alternative
    Downstream
    NMD
    sORF
Glioma, Liver, MEF,
MESC
5053 129

ATG ...

MCL ...

Ribo-seq
ATG 7 sORFs_org_Mouse
    Downstream
    NMD
    sORF
B_cell, Brain, E14,
Liver, R1E
1261958 75

ATA ...

IIQ ...

Ribo-seq
ATA moderate 1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
E14
1568556 165

CTG ...

LEN ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
Brain
1028933 108

GTG ...

VCR ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
Brain, Liver, R1E
1028661 132

TTG ...

LKN ...

Ribo-seq
TTG 4 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
Brain, Liver, R1E
416743 39

AAG ...

KQG ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
C2C12
247445 96

ATG ...

MLG ...

Ribo-seq
ATG weak 5 sORFs_org_Mouse
Johnstone2016
    Downstream
    NMD
    sORF
Brain, E14, Glioma,
Liver, MEF, MESC,
R1E, v6-5
609499 63

TTG ...

LVV ...

Ribo-seq
TTG strong 1 sORFs_org_Mouse
    Downstream
    NMD
    sORF
R1E
416718 84

AAG ...

KLR ...

Ribo-seq
AAG 2 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
C2C12, E14
1263629 240

AAG ...

KLR ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
E14
429540 90

ATG ...

MAC ...

Ribo-seq
ATG strong 3 sORFs_org_Mouse
Johnstone2016
    Downstream
    NMD
    sORF
E14, Glioma, Liver,
MEF, MESC
919484 75

ATC ...

IAA ...

Ribo-seq
ATC 1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
E14

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5