Transcript 5139 | MetamORF

Transcript

ID CARD

MetamORF ID

5139

ENSMUST00000034164

Name

Ist1-201

Strand

Biotype

protein_coding

Start-end positions

109671325-109693260

CDS Start-stop positions

109672448-109683763

CDS Relative positions

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

NCBI:71955

Aliases

2400003C14Rik,
AW536298, ENSMUSG00000031729, Ist1,
MGI:1919205, mKIAA0174, NCBI:71955,
OFF:Ist1

Chr 8

ORFs

58 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
429842	36	CTG ...	LRL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
245706	36	ATG ...	MYP ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, R1E, v6-5
245020	33	ATG ...	MSE ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC, NSC, R1E
239299	30	ATG ...	MIF ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
250499	168	CTG ...	LFL ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, R1E, v6-5
430906	66	TTG ...	LDA ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative sORF Upstream	MEF, NSC
920893	51	ATC ...	IPP ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC
78917	96	TTG ...	LGD ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	NSC, v6-5
253719	147	TTG ...	LDP ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, R1E, v6-5
78538	78	TTG ...	LCP ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	E14, NSC, v6-5
243358	84	TTG ...	LYC ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E, v6-5
80916	57	CTG ...	LTT ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, R1E
240345	33	TTG ...	LMI ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
429595	51	CTG ...	LLG ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, Neutrophil, v6-5
246221	87	GTG ...	VDC ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, R1E, v6-5
253192	99	ATG ...	MPS ...	Ribo-seq	ATG		15	sORFs_org_Mouse Johnstone2016	Alternative Overlapping sORF Upstream	3T3, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, R1E, Spleen_B_cell
253620	114	TTG ...	LKL ...	Ribo-seq	TTG		10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
5597	33	GTG ...	VQD ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, R1E, Skin_tumor, v6-5
250379	276	GTG ...	VDC ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, R1E, v6-5
253650	180	ATG ...	MVI ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Liver, R1E, v6-5
81797	87	CTG ...	LMG ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	E14, NSC, v6-5
244308	60	GTG ...	VPN ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, R1E, v6-5
253007	123	TTG ...	LDA ...	Ribo-seq	TTG		9	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Brain, MEF, Neutrophil, NSC, R1E, Spleen_B_cell
250468	189	ATG ...	MTL ...	Ribo-seq	ATG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, R1E, Spleen_B_cell, v6-5
1581131	75	TTG ...	LMT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
433073	93	ATG ...	MYP ...	Ribo-seq	ATG		9	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, Glioma, Liver, MEF, MESC, Neutrophil, NSC, Spleen_B_cell, v6-5
613183	204	TTG ...	LFC ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, R1E
252914	150	TTG ...	LLD ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, R1E, v6-5
80094	60	TTG ...	LLT ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, R1E
1104341	138	GTG ...	VVL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
250866	108	TTG ...	LPR ...	Ribo-seq	TTG		11	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
1106621	132	CTG ...	LEE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
80555	36	CTG ...	LLE ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E, v6-5
919305	60	ACG ...	TSQ ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
918862	213	ATG ...	MPS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
247248	126	CTG ...	LQS ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E, v6-5
78515	33	CTG ...	LEP ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E, v6-5
246697	51	TTG ...	LPR ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF, NSC, R1E, v6-5
80582	84	ATG ...	MGL ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	E14, NSC, v6-5
5432	66	CTG ...	LCQ ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, R1E, Skin_tumor, v6-5
918046	45	ATT ...	ISY ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
244010	57	TTG ...	LKL ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, NSC, R1E, v6-5
5715	39	ATG ...	MAS ...	Ribo-seq	ATG	strong	8	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	BMDC, E14, Glioma, Liver, MEF, MESC, R1E, Skin_tumor, v6-5
253343	177	GTG ...	VIK ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, R1E, v6-5
428112	48	TTG ...	LGW ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, Neutrophil, v6-5
1266959	252	AGG ...	RPF ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
80705	39	ATG ...	MLP ...	Ribo-seq	ATG		4	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Neutrophil, NSC, v6-5
5363	75	TTG ...	LPI ...	Ribo-seq	TTG	weak	6	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, R1E, Skin_tumor, v6-5
239310	105	CTG ...	LWI ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E, v6-5
80813	36	CTG ...	LGS ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF, NSC, v6-5
918542	54	ATC ...	IRV ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
918683	57	ATA ...	IQQ ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
918141	72	ATG ...	MTL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, MEF
252570	192	TTG ...	LMT ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Liver, R1E, Spleen_B_cell, v6-5
251285	159	CTG ...	LHR ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Liver, R1E, v6-5
603293	36	CTG ...	LGC ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
5138	42	CTG ...	LHL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E, Skin_tumor
1579560	60	GTG ...	VIK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF

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