Transcript 52232 | MetamORF

Transcript

ID CARD

MetamORF ID

52232

ENSMUST00000055984

Name

Isg20l2-201

Strand

Biotype

protein_coding

Start-end positions

87930314-87940686

CDS Start-stop positions

87931484-87939351

CDS Relative positions

Sequences

Transcript sequence

GTT ...

Genome browsers

UCSC

Gene

NCBI:229504

Aliases

4930429N24,
C80587, ENSMUSG00000048039, Isg20l2,
MGI:2140076, NCBI:229504, OFF:Isg20l2

Chr 3

ORFs

48 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
507440	69	TTG ...	LEE ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, MEF, R1E, Spleen_B_cell
1224241	183	ACG ...	TLA ...	Ribo-seq	ACG		1	sORFs_org_Mouse	sORF Upstream	E14
1171082	84	CTG ...	LYR ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, R1E, v6-5
819931	60	CTG ...	LLH ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
820856	66	GTG ...	VAS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
506909	126	GTG ...	VRA ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Spleen_B_cell
503888	150	CTG ...	LRW ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Spleen_B_cell
1223124	39	ATA ...	IKR ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1223790	195	ATC ...	IRL ...	Ribo-seq	ATC		1	sORFs_org_Mouse	sORF Upstream	E14
506755	114	CTG ...	LRA ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, E14, Spleen_B_cell
972652	99	ATC ...	IRI ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	sORF Upstream	BMDC
536154	126	ATG ...	MPF ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, Glioma, Liver, MEF, MESC
507336	57	GTG ...	VPF ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, Spleen_B_cell
504302	33	ATG ...	MEW ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, Glioma, Liver, MEF, MESC, Spleen_B_cell
750624	75	CTG ...	LIA ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, E14, MEF, Neutrophil, R1E, v6-5
507515	189	CTG ...	LRW ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Spleen_B_cell
537250	93	TTG ...	LGN ...	Ribo-seq	TTG	strong	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, MEF, R1E
508511	234	TTG ...	LPS ...	Ribo-seq	TTG		5	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, E14, MEF, Spleen_B_cell
413550	249	TTG ...	LYL ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, C2C12, E14, Spleen_B_cell
1171908	87	ATG ...	MLY ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, R1E, v6-5
502649	60	ATG ...	MPN ...	Ribo-seq	ATG	moderate	8	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, Glioma, Liver, MEF, MESC, R1E, Spleen_B_cell
507134	42	TTG ...	LSR ...	Ribo-seq	TTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, MEF, R1E, Spleen_B_cell
749308	114	ATG ...	MTT ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell
1223209	93	ATT ...	ITL ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	sORF Upstream	E14
508236	93	CTG ...	LHP ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, E14, MEF, Neutrophil, Spleen_B_cell, v6-5
503218	162	CTG ...	LLT ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, E14, Spleen_B_cell
895161	51	ACG ...	TLC ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
507477	141	CTG ...	LAS ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, E14, Spleen_B_cell
505066	57	ATG ...	MLN ...	Ribo-seq	ATG	weak	11	sORFs_org_Mouse Johnstone2016	sORF Upstream	3T3, B_cell, E14, Glioma, Liver, MEF, MESC, Neutrophil, R1E, Spleen_B_cell, v6-5
536279	63	GTG ...	VAS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell
506317	30	ATG ...	MSL ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, E14, Liver, MEF, Spleen_B_cell, v6-5
1223052	87	ATC ...	IPS ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
507871	99	CTG ...	LRL ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, MEF, Neutrophil, Spleen_B_cell, v6-5
506681	60	CTG ...	LRL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, MEF, Spleen_B_cell
508127	165	GTG ...	VRA ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Spleen_B_cell
1219245	42	ATT ...	IPQ ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	sORF Upstream	E14
52231	36	GTG ...	VRE ...	Ribo-seq	GTG	moderate	13	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Brain, E14, MEF, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
503091	123	GTG ...	VGA ...	Ribo-seq	GTG	strong	4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, E14, Spleen_B_cell
503323	87	TTG ...	LSP ...	Ribo-seq	TTG	moderate	10	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, E14, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
506991	132	CTG ...	LPE ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, E14, Spleen_B_cell
894691	156	ACG ...	THS ...	Ribo-seq	ACG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, E14
748087	33	CTG ...	LTA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
507485	249	TTG ...	LSP ...	Ribo-seq	TTG		5	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, E14, MEF, Spleen_B_cell
1223287	174	ATC ...	ILV ...	Ribo-seq	ATC		1	sORFs_org_Mouse	sORF Upstream	E14
541046	168	GTG ...	VGN ...	Ribo-seq	GTG		5	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, MEF, v6-5
502604	54	TTG ...	LNY ...	Ribo-seq	TTG	moderate	10	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, BMDC, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
507039	54	CTG ...	LHP ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, E14, MEF, Spleen_B_cell
53365	39	ATG ...	MVR ...	Ribo-seq	ATG	moderate	17	sORFs_org_Mouse Johnstone2016	Alternative sORF Upstream	3T3, B_cell, BMDC, Brain, C2C12, E14, Glioma, Liver, MEF, MESC, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5

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