Transcript 423906

Transcript

ID CARD

MetamORF ID

423906

ENSMUST00000205606

Name

Iqgap1-205

Strand

Biotype

nonsense_mediated_decay

Start-end positions

80726779-80730248

CDS Start-stop positions

80729671-

CDS Relative positions

Sequences

Transcript sequence

AAA ...

Genome browsers

UCSC

Gene

NCBI:29875

Aliases

AA682088,
D7Ertd237e, D7Ertd257e, ENSMUSG00000030536,
Iqgap1, MGI:1352757, mKIAA0051,
NCBI:29875, OFF:Iqgap1

Chr 7

ORFs

19 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
531609	225	CTG ...	LLY ...	Ribo-seq	CTG		4	sORFs_org_Mouse	NMD sORF	3T3, B_cell, BMDC, Spleen_B_cell
912285	66	AAG ...	KPV ...	Ribo-seq	AAG		1	sORFs_org_Mouse	NMD sORF	BMDC
590518	120	CTG ...	LGS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	3T3, B_cell
1743758	129	GTG ...	VCP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	MEF
911849	135	ATG ...	MPS ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	NMD sORF	BMDC
532428	57	CTG ...	LHE ...	Ribo-seq	CTG		5	sORFs_org_Mouse	NMD sORF	3T3, B_cell, BMDC, MEF, Spleen_B_cell
914887	45	ATC ...	IIN ...	Ribo-seq	ATC		1	sORFs_org_Mouse	NMD sORF	BMDC
912185	45	ATT ...	IGE ...	Ribo-seq	ATT		1	sORFs_org_Mouse	NMD sORF	BMDC
913029	195	ATC ...	IVA ...	Ribo-seq	ATC		1	sORFs_org_Mouse	NMD sORF	BMDC
531197	138	GTG ...	VAC ...	Ribo-seq	GTG		3	sORFs_org_Mouse	NMD sORF	3T3, B_cell, Spleen_B_cell
594320	69	CTG ...	LGD ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	3T3, B_cell
423905	69	CTG ...	LKD ...	Ribo-seq	CTG		4	sORFs_org_Mouse	NMD sORF	3T3, B_cell, BMDC, Spleen_B_cell
915471	81	ATT ...	IAK ...	Ribo-seq	ATT		1	sORFs_org_Mouse	NMD sORF	BMDC
534896	117	CTG ...	LQD ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	BMDC, Spleen_B_cell
1672291	54	GTG ...	VTS ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	NMD sORF	MEF
913786	78	AAG ...	KMF ...	Ribo-seq	AAG		1	sORFs_org_Mouse	NMD sORF	BMDC
593255	162	CTG ...	LSA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	3T3, B_cell
913175	57	ATC ...	IYI ...	Ribo-seq	ATC		1	sORFs_org_Mouse	NMD sORF	BMDC
914064	234	ATC ...	IGN ...	Ribo-seq	ATC		1	sORFs_org_Mouse	NMD sORF	BMDC

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