Transcript 525898

Transcript

ID CARD

MetamORF ID

525898

ENSMUST00000145743

Name

Ipo8-205

Strand

Biotype

retained_intron

Start-end positions

148790945-148824466

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TTG ...

Genome browsers

UCSC

Gene

NCBI:320727

Aliases

6230418K12Rik,
Abcc10, C130009K11Rik, ENSMUSG00000040029,
Ipo8, MGI:2444611, MRP7,
NCBI:320727, OFF:Ipo8, OM-1,
Om1, Ranbp8

Chr 6

ORFs

13 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
204264	36	TTG ...	LTL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
1807750	108	CTG ...	LIE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	R1E
1806744	90	CTG ...	LQN ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	R1E
1807170	78	GTG ...	VEA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	R1E
1246164	105	ATT ...	IED ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Intronic sORF	E14
1810161	186	GTG ...	VLH ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	R1E
1436936	51	TTG ...	LYT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Liver
1806723	183	CTG ...	LHA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	R1E
525897	96	GTG ...	VIF ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
1807290	165	TTG ...	LKF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	R1E
2993	33	CTG ...	LLS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
1807715	96	CTG ...	LFL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	R1E
1244759	117	AAG ...	KKS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14

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