Transcript 462044

Transcript

ID CARD

MetamORF ID

462044

ENSMUST00000190801

Name

Ipo11-207

Strand

Biotype

nonsense_mediated_decay

Start-end positions

106794447-106847430

CDS Start-stop positions

106836369-

CDS Relative positions

Sequences

Transcript sequence

TGC ...

Genome browsers

UCSC

Gene

NCBI:76582

Aliases

1700081H05Rik,
2510001A17Rik, AI314624, AW555235,
E330021B14Rik, ENSMUSG00000042590, Ipo11,
MGI:2442377, NCBI:76582, OFF:Ipo11,
Ranbp11

Chr 13

ORFs

20 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
337119	84	GTG ...	VGR ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	NMD sORF	E14, MEF, v6-5
668182	147	GTG ...	VHT ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	NMD sORF	3T3, E14, v6-5
336129	39	TTG ...	LWN ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	NMD sORF	E14, MEF, NSC, v6-5
1304918	120	AAG ...	KAS ...	Ribo-seq	AAG	strong	1	sORFs_org_Mouse	NMD sORF	E14
670366	138	GTG ...	VSL ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	NMD sORF	3T3, v6-5
337660	33	TTG ...	LLS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	NMD sORF	E14, v6-5
333607	33	ATG ...	MRW ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	v6-5
335922	60	GTG ...	VEA ...	Ribo-seq	GTG		4	sORFs_org_Mouse	NMD sORF	E14, MEF, NSC, v6-5
462043	132	CTG ...	LQQ ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	NMD sORF	3T3, E14, Spleen_B_cell, v6-5
338584	102	TTG ...	LMS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	v6-5
672701	87	CTG ...	LGE ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	NMD sORF	3T3, v6-5
669399	51	GTG ...	VDT ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	NMD sORF	3T3, E14, v6-5
26456	105	GTG ...	VIE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NMD sORF	E14, v6-5
338196	48	TTG ...	LYV ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	NMD sORF	MEF, v6-5
1304998	159	ATG ...	MRS ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	NMD sORF	E14
336603	39	TTG ...	LAL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	NMD sORF	E14, v6-5
1302101	138	AGG ...	RRS ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	NMD sORF	E14
672277	159	CTG ...	LKD ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	NMD sORF	3T3, E14, v6-5
672359	165	CTG ...	LAL ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	NMD sORF	3T3, v6-5
1135789	87	CTG ...	LSW ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	v6-5

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