Transcript 420606

Transcript

ID CARD

MetamORF ID

420606

ENSMUST00000184445

Name

Il6st-209

Strand

Biotype

protein_coding

Start-end positions

112472599-112501141

CDS Start-stop positions

112475046-112494595

CDS Relative positions

Sequences

Transcript sequence

GAA ...

Genome browsers

UCSC

Gene

NCBI:16195

Aliases

5133400A03Rik,
AA389424, BB405851, CD130,
D13Ertd699e, ENSMUSG00000021756, gp130,
Il6st, MGI:96560, NCBI:16195,
OFF:Il6st

Chr 13

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
672318	69	CTG ...	LQH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
671513	168	GTG ...	VDS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Downstream sORF	3T3, Liver
668629	216	GTG ...	VSA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
1401964	273	GTG ...	VNL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream sORF	Liver
670825	213	ATG ...	MLL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
1401158	117	TTG ...	LYM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream sORF	Liver
670750	141	CTG ...	LSS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream sORF	3T3, Liver
672446	132	CTG ...	LSS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream sORF	3T3, Liver
671424	234	TTG ...	LCA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
668720	180	GTG ...	VIL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Downstream sORF	3T3, Liver
338523	45	ATG ...	MGQ ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
670502	177	GTG ...	VED ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
338669	57	CTG ...	LAA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Downstream sORF	3T3
672673	207	CTG ...	LFP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
669292	210	CTG ...	LLF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
336123	42	GTG ...	VGP ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Downstream sORF	MEF
669990	87	CTG ...	LWT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream sORF	3T3
670558	174	GTG ...	VHV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Downstream sORF	3T3, Liver
671847	192	TTG ...	LDY ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Downstream sORF	3T3, Liver
335475	48	CTG ...	LTS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Liver
1304441	234	GTG ...	VEW ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream sORF	E14
27578	54	ATG ...	MTS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF Upstream	C2C12
1136362	222	CTG ...	LPL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Downstream Overlapping sORF	Liver

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