Transcript 673090

Transcript

ID CARD

MetamORF ID

673090

ENSMUST00000183886

Name

Il6st-206

Strand

Biotype

protein_coding

Start-end positions

112464112-112483616

CDS Start-stop positions

112475046-112481548

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

NCBI:16195

Aliases

5133400A03Rik,
AA389424, BB405851, CD130,
D13Ertd699e, ENSMUSG00000021756, gp130,
Il6st, MGI:96560, NCBI:16195,
OFF:Il6st

Chr 13

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
670711	129	GTG ...	VCG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF Upstream	MEF
668629	216	GTG ...	VSA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
673089	84	TTG ...	LIT ...	Ribo-seq	TTG		7	sORFs_org_Mouse	sORF Upstream	3T3, Liver, MEF, NSC, v6-5
1403093	225	GTG ...	VSA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
27578	54	ATG ...	MTS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF Upstream	Liver
332642	42	TTG ...	LSS ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
943046	39	TTG ...	LAS ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
670043	51	GTG ...	VRS ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
1402884	78	CTG ...	LQH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
338478	69	GTG ...	VVT ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
337923	36	GTG ...	VPV ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
1402803	243	TTG ...	LCA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
671630	69	GTG ...	VVW ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF Upstream	MEF
672673	207	CTG ...	LFP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
671232	66	GTG ...	VWA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF Upstream	MEF
670502	177	GTG ...	VED ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
339399	30	GTG ...	VGP ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
670592	243	ATG ...	MPA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
333195	63	CTG ...	LQD ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Liver
671424	234	TTG ...	LCA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
332409	36	ATG ...	MLY ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative sORF Upstream	Liver
669292	210	CTG ...	LLF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
342457	72	ATG ...	MLY ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14, Liver, MEF, NSC, v6-5
340013	54	CTG ...	LNF ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
670825	213	ATG ...	MLL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
1402640	186	GTG ...	VED ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver

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