Transcript 52181 | MetamORF

Transcript

ID CARD

MetamORF ID

52181

ENSMUST00000136176

Name

Ift80-203

Strand

Biotype

retained_intron

Start-end positions

68893645-68920105

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TTC ...

Genome browsers

UCSC

Gene

NCBI:68259

Aliases

4921524P20Rik,
ENSMUSG00000027778, Ift80, MGI:1915509,
mKIAA1374, NCBI:68259, OFF:Ift80,
Wdr56

Chr 3

ORFs

15 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
53031	141	GTG ...	VLA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis
53387	51	GTG ...	VDR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis
53777	30	TTG ...	LIK ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Testis
53854	69	TTG ...	LRW ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Testis
53565	69	CTG ...	LLQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Testis
53579	108	GTG ...	VSS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis
53741	36	CTG ...	LPK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
54241	174	TTG ...	LAV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Testis
53168	156	CTG ...	LVH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
52199	180	CTG ...	LEL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
52180	93	TTG ...	LIQ ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Testis
54711	147	CTG ...	LDQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Testis
52482	204	GTG ...	VSF ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis
54088	153	GTG ...	VHI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis
54607	135	TTG ...	LAW ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Testis

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