Transcript 35997 | MetamORF

Transcript

ID CARD

MetamORF ID

35997

ENSMUST00000140692

Name

Ift140-204

Strand

Biotype

processed_transcript

Start-end positions

25045517-25087991

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCA ...

Genome browsers

UCSC

Gene

NCBI:106633

Aliases

AI661311,
ENSMUSG00000024169, Ift140, MGI:2146906,
mKIAA0590, NCBI:106633, OFF:Ift140,
Tce5, Wdtc2

Chr 17

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
37374	51	TTG ...	LCA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
38706	273	CTG ...	LVP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, Testis
36259	66	GTG ...	VSP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
36796	75	GTG ...	VAM ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
38484	33	CTG ...	LPF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
37592	96	GTG ...	VGS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
37923	156	GTG ...	VCL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
37627	117	CTG ...	LAQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
38637	114	CTG ...	LRE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
37868	147	GTG ...	VCE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
39340	282	CTG ...	LAQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, Testis
36609	78	CTG ...	LRC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
38641	108	CTG ...	LVP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
36380	186	GTG ...	VKT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
38347	111	CTG ...	LED ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Testis, v6-5
38138	186	GTG ...	VNH ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
37353	135	TTG ...	LQE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
39032	243	CTG ...	LRC ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, Testis
39361	261	GTG ...	VGS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, Testis
35996	81	GTG ...	VNV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
37441	87	CTG ...	LEA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
37233	117	GTG ...	VGL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Testis, v6-5
36178	177	GTG ...	VDS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Testis, v6-5

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