Transcript 474113

Transcript

ID CARD

MetamORF ID

474113

ENSMUST00000123196

Name

Ifnar1-203

Strand

Biotype

nonsense_mediated_decay

Start-end positions

91485249-91507437

CDS Start-stop positions

91485344-91505411

CDS Relative positions

Sequences

Transcript sequence

GCG ...

Genome browsers

UCSC

Gene

NCBI:15975

Aliases

ENSMUSG00000022967,
Ifar, Ifnar, Ifnar1,
Ifrc, Infar, MGI:107658,
NCBI:15975, OFF:Ifnar1

Chr 16

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
475035	84	TTG ...	LED ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	Alternative CDS NMD sORF	Liver, R1E, Spleen_B_cell
474754	30	ATG ...	MKN ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Spleen_B_cell
1409880	84	GTG ...	VLF ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Liver
1408418	69	CTG ...	LLN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Liver
1539685	57	CTG ...	LRS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
1408571	105	GTG ...	VYC ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Liver, R1E
474624	165	GTG ...	VGT ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Alternative CDS NMD sORF	Liver, R1E, Spleen_B_cell
1408633	111	CTG ...	LTV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Liver
475519	141	GTG ...	VLS ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative CDS NMD sORF	Liver, R1E, Spleen_B_cell
474112	105	GTG ...	VPS ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative CDS NMD sORF	Liver, R1E, Spleen_B_cell
792981	60	CTG ...	LKW ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, R1E
369391	30	ATG ...	MST ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Liver, Spleen_B_cell
792959	117	TTG ...	LPE ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	B_cell, Liver
1409046	120	CTG ...	LQP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Liver
474320	30	GTG ...	VTF ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	R1E
475886	105	GTG ...	VPG ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, Liver, R1E, Spleen_B_cell
475129	117	CTG ...	LKP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	R1E
1409589	66	CTG ...	LNK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Liver
476933	63	CTG ...	LGN ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative CDS NMD sORF	Liver, R1E, Spleen_B_cell
793642	87	GTG ...	VDA ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, Liver, R1E
476947	30	CTG ...	LRT ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative CDS NMD sORF	B_cell, Liver, R1E, Spleen_B_cell
1409400	114	TTG ...	LLV ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Liver, R1E

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