Metam
ORF

Logo

Transcript

Transcript

ID CARD

MetamORF ID

51755

ID

ENSMUST00000204174

Name

Hspa4l-207

Strand

+

Biotype

retained_intron

Start-end positions

40784010-40786820

CDS Start-stop positions

-

CDS Relative positions

-

Sequences

Transcript sequence

TTA ...

Gene

ID

NCBI:18415

Aliases

94kDa,
AI461691, APG-1, ENSMUSG00000025757,
Hspa4l, MGI:107422, NCBI:18415,
OFF:Hspa4l, Osp94


Chr 3

ORFs

18 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

52067 99

CTG ...

LYE ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Intronic
    sORF
MEF, Testis
53571 72

TTG ...

LKN ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    Intronic
    sORF
MEF, Testis
140725 87

ATG ...

MLK ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    Intronic
    sORF
3T3, MEF
1649318 57

ATG ...

MKK ...

Ribo-seq
ATG weak 1 sORFs_org_Mouse
    Intronic
    sORF
MEF
1649160 45

CTG ...

LLK ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Intronic
    sORF
MEF
52614 33

CTG ...

LST ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Intronic
    sORF
Testis
53337 78

ATG ...

MLL ...

Ribo-seq
ATG 3 sORFs_org_Mouse
    Intronic
    sORF
3T3, MEF, Testis
51754 69

TTG ...

LGK ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    Intronic
    sORF
Brain, Testis
54018 57

ATG ...

MIS ...

Ribo-seq
ATG 3 sORFs_org_Mouse
    Intronic
    sORF
MEF, NSC, Testis
129700 90

ATG ...

MML ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Intronic
    sORF
MEF
54289 132

CTG ...

LSA ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    Intronic
    sORF
Brain, MEF, Testis
54131 105

GTG ...

VEH ...

Ribo-seq
GTG 2 sORFs_org_Mouse
    Intronic
    sORF
Brain, Testis
1648111 69

ATG ...

MKD ...

Ribo-seq
ATG moderate 1 sORFs_org_Mouse
    Intronic
    sORF
MEF
52744 45

CTG ...

LKV ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Intronic
    sORF
Brain, Testis
53698 54

TTG ...

LGT ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    Intronic
    sORF
Brain, Testis
138200 75

CTG ...

LLK ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Intronic
    sORF
MEF
54014 39

GTG ...

VIE ...

Ribo-seq
GTG 2 sORFs_org_Mouse
    Intronic
    sORF
Brain, Testis
1649000 60

ATG ...

MII ...

Ribo-seq
ATG moderate 1 sORFs_org_Mouse
    Intronic
    sORF
MEF

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5