Transcript 414041

Transcript

ID CARD

MetamORF ID

414041

ENSMUST00000084219

Name

Hnrnpr-201

Strand

Biotype

protein_coding

Start-end positions

136311025-136340863

CDS Start-stop positions

136317111-136340028

CDS Relative positions

Sequences

Transcript sequence

GTC ...

Genome browsers

UCSC

Gene

NCBI:74326

Aliases

2610003J05Rik,
2610528B01Rik, ENSMUSG00000066037, Hnrnpr,
Hnrpr, MGI:1891692, NCBI:74326,
OFF:Hnrnpr

Chr 4

ORFs

45 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
825149	42	ATG ...	MRI ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, NSC
414040	99	ATG ...	MKE ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse	sORF Upstream	C2C12, E14, MEF, NSC
1226995	45	ATG ...	MRS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF
557276	153	TTG ...	LVA ...	Ribo-seq	TTG		12	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, Brain, E14, MEF, Neutrophil, NSC, R1E, v6-5
150338	63	ATG ...	MAV ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
825385	45	CTG ...	LTP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
823522	87	ATG ...	MMI ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, NSC
822463	144	GTG ...	VEG ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
827021	141	GTG ...	VDL ...	Ribo-seq	GTG		9	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Brain, MEF, Neutrophil, NSC, R1E, v6-5
152695	33	CTG ...	LWK ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1227050	105	ATC ...	ILM ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	sORF Upstream	E14
1225620	96	AAG ...	KTT ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1735115	45	CTG ...	LTP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
158183	42	ATG ...	MKI ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF, Neutrophil, NSC
512322	69	ATG ...	MII ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF, NSC
823725	84	ATG ...	MLS ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	sORF Upstream	E14, MEF
901044	120	ATC ...	IDA ...	Ribo-seq	ATC		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, E14
1230335	39	AAG ...	KIP ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1228307	54	AGG ...	RLC ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
58599	111	ATG ...	MWI ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse	sORF Upstream	E14, MEF, NSC
1732262	66	ATG ...	MRK ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	sORF Upstream	MEF
164003	48	GTG ...	VCT ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Neutrophil
826881	75	CTG ...	LQQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Neutrophil
1230644	30	AAG ...	KSN ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
824221	132	GTG ...	VDM ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
512387	30	TTG ...	LRG ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1229755	111	ATT ...	IIM ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
558184	51	CTG ...	LSH ...	Ribo-seq	CTG		12	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, v6-5
513448	75	ATG ...	MVM ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, NSC
1227911	51	AGG ...	RIM ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
823942	102	ATG ...	MHS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
414414	108	AGG ...	REF ...	Ribo-seq	AGG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	C2C12, E14
826365	84	ATG ...	MIT ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
58979	42	GTG ...	VCT ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
1656849	30	TTG ...	LRT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
160435	48	TTG ...	LNM ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, NSC
828057	84	CTG ...	LSV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell
162507	69	ATG ...	MAV ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
59479	30	GTG ...	VCS ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, Neutrophil, NSC
822496	102	TTG ...	LMK ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	sORF Upstream	MEF, NSC
510586	126	ATG ...	MAT ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF
512254	105	ATG ...	MAM ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, NSC
544476	99	ATG ...	MKT ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF, NSC
160163	51	GTG ...	VEA ...	Ribo-seq	GTG	strong	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, MEF, Neutrophil, NSC
514432	36	GTG ...	VCS ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, Neutrophil, NSC

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