Transcript 411176

Transcript

ID CARD

MetamORF ID

411176

ENSMUST00000153608

Name

Hnrnpm-208

Strand

Biotype

retained_intron

Start-end positions

33668638-33685385

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

NCBI:76936

Aliases

2610023M21Rik,
AA409009, ENSMUSG00000059208, Hnrnpm,
Hnrpm, MGI:1926465, mKIAA4193,
NCBI:76936, OFF:Hnrnpm

Chr 17

ORFs

18 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
36221	48	GTG ...	VKN ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
955703	72	ATC ...	IAL ...	Ribo-seq	ATC	strong	1	sORFs_org_Mouse	Intronic sORF	E14
1190932	33	AAG ...	KKK ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
482745	39	GTG ...	VPS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	B_cell, Liver, Neutrophil
797265	30	TTG ...	LLN ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intronic sORF	B_cell, E14
1192539	45	AAG ...	KTW ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
482291	87	GTG ...	VAA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, E14
954739	36	ATT ...	IQD ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
1192441	285	AGG ...	RGR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
1191227	36	AAG ...	KIQ ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
956445	90	AGG ...	RKV ...	Ribo-seq	AGG		2	sORFs_org_Mouse	Intronic sORF	BMDC, E14
798322	57	TTG ...	LNS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
956279	105	AAG ...	KRQ ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
387528	66	TTG ...	LSH ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
411175	66	AGG ...	RKR ...	Ribo-seq	AGG		2	sORFs_org_Mouse	Intronic sORF	C2C12, E14
798684	48	GTG ...	VEL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, E14
422159	168	AGG ...	RKE ...	Ribo-seq	AGG		2	sORFs_org_Mouse	Intronic sORF	C2C12, E14
795677	33	GTG ...	VLL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	B_cell

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