Transcript 782174

Transcript

ID CARD

MetamORF ID

782174

ENSMUST00000043269

Name

Hnrnpk-201

Strand

Biotype

protein_coding

Start-end positions

58391239-58402502

CDS Start-stop positions

58392386-58400390

CDS Relative positions

Sequences

Transcript sequence

CGA ...

Genome browsers

UCSC

Gene

NCBI:15387

Aliases

ENSMUSG00000021546,
Hnrnpk, Hnrpk, KBBP,
MGI:99894, NCBI:15387, NOVA,
OFF:Hnrnpk

Chr 13

ORFs

15 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
944025	108	GTG ...	VLV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF
975869	90	ATT ...	IAA ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF
27838	81	CTG ...	LQT ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Brain, Liver, MEF, R1E
26798	54	CTG ...	LVG ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver, R1E
975728	222	CTG ...	LLL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF Upstream	MEF
975841	192	GTG ...	VLV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF Upstream	MEF
26616	51	CTG ...	LHG ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Brain, Liver, MEF, R1E
975874	81	ATC ...	ILC ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
27658	45	GTG ...	VGV ...	Ribo-seq	GTG	strong	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver, R1E
1305703	276	CTG ...	LQT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14
27391	75	GTG ...	VVL ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
27169	69	TTG ...	LTE ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
998846	30	TTG ...	LRP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
975820	84	ATC ...	ILC ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
784346	138	CTG ...	LLL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Brain, MEF

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