Transcript 517538

Transcript

ID CARD

MetamORF ID

517538

ENSMUST00000151323

Name

Hnrnpdl-206

Strand

Biotype

retained_intron

Start-end positions

100035960-100037123

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CTG ...

Genome browsers

UCSC

Gene

NCBI:50926

Aliases

AA407431,
AA959857, D5Ertd650e, D5Wsu145e,
ENSMUSG00000029328, hnRNP DL, hnRNP-DL,
Hnrnpdl, Hnrnpdl1, Hnrpdl,
JKTBP, MGI:1355299, NCBI:50926,
OFF:Hnrnpdl

Chr 5

ORFs

6 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
62729	108	GTG ...	VYR ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	Brain, Neutrophil, R1E, Spleen_B_cell
1238233	132	ATC ...	IKV ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	E14
63119	102	GTG ...	VRN ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	R1E, Spleen_B_cell
517537	135	TTG ...	LEH ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
1240535	240	AAG ...	KQI ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
1239671	33	ATA ...	IWT ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Intronic sORF	E14

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