Transcript 62305 | MetamORF

Transcript

ID CARD

MetamORF ID

62305

ENSMUST00000149384

Name

Hnrnpdl-205

Strand

Biotype

nonsense_mediated_decay

Start-end positions

100035426-100038895

CDS Start-stop positions

100038593-

CDS Relative positions

Sequences

Transcript sequence

TTT ...

Genome browsers

UCSC

Gene

NCBI:50926

Aliases

AA407431,
AA959857, D5Ertd650e, D5Wsu145e,
ENSMUSG00000029328, hnRNP DL, hnRNP-DL,
Hnrnpdl, Hnrnpdl1, Hnrpdl,
JKTBP, MGI:1355299, NCBI:50926,
OFF:Hnrnpdl

Chr 5

ORFs

15 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
65038	51	CTG ...	LRA ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	NMD sORF	Brain, E14, R1E, Testis
521274	102	CTG ...	LPC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	Brain
63679	183	CTG ...	LTE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	Testis
62729	108	GTG ...	VYR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	Testis
63560	153	GTG ...	VVD ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	Testis
62464	69	CTG ...	LPP ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	NMD sORF	Brain, E14, R1E, Testis
1660197	189	ATG ...	MEI ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	MEF
1659832	201	ATG ...	MIK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	MEF
62513	45	TTG ...	LDL ...	Ribo-seq	TTG		4	sORFs_org_Mouse	NMD sORF	Brain, MEF, R1E, Testis
65054	210	TTG ...	LSW ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	Testis
62509	39	TTG ...	LCF ...	Ribo-seq	TTG		4	sORFs_org_Mouse	NMD sORF	Brain, MEF, R1E, Testis
64402	180	CTG ...	LFI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	Testis
63119	102	GTG ...	VRN ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NMD sORF	E14, Testis
62304	153	TTG ...	LRN ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	Testis
63101	171	TTG ...	LSR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	Testis

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