Transcript 26551 | MetamORF

Transcript

ID CARD

MetamORF ID

26551

ENSMUST00000102972

Name

Hist1h4h-201

Strand

Biotype

protein_coding

Start-end positions

23531050-23531519

CDS Start-stop positions

23531115-23531426

CDS Relative positions

66-377

Sequences

Transcript sequence

ACT ...

Genome browsers

UCSC

Gene

NCBI:69386

Aliases

1700024H08Rik,
ENSMUSG00000060981, H2c8, H4c1,
H4c11, H4c12, H4c14,
H4c2, H4c3, H4c4,
H4c6, H4c8, H4c9,
H4f16, Hist1h4h, MGI:2448427,
NCBI:69386, OFF:H4c8

Chr 13

ORFs

12 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
26550	75	GTG ...	VPV ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, MEF, NSC, Spleen_B_cell, Testis
942915	108	AAG ...	KVL ...	Ribo-seq	AAG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
27493	123	GTG ...	VAR ...	Ribo-seq	GTG	strong	11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, C2C12, E14, Liver, MEF, Neutrophil, NSC, Testis
975737	48	AGG ...	RSW ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
26886	54	TTG ...	LRF ...	Ribo-seq	TTG	weak	12	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Brain, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, Testis
941588	102	TTG ...	LAK ...	Ribo-seq	TTG	strong	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14
27772	69	GTG ...	VPS ...	Ribo-seq	GTG	weak	8	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, E14, MEF, Neutrophil, NSC, Testis
1303080	30	ATT ...	IRR ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
27302	129	CTG ...	LVV ...	Ribo-seq	CTG	moderate	12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, C2C12, E14, Liver, MEF, Neutrophil, NSC, Testis
1303909	96	AAG ...	KAA ...	Ribo-seq	AAG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
462736	90	CTG ...	LHI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Spleen_B_cell
27325	57	CTG ...	LLR ...	Ribo-seq	CTG	moderate	11	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Brain, Liver, MEF, Neutrophil, NSC, Testis

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