Transcript 779323

Transcript

ID CARD

MetamORF ID

779323

ENSMUST00000149740

Name

Hif1a-204

Strand

Biotype

retained_intron

Start-end positions

73926602-73928532

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ATC ...

Genome browsers

UCSC

Gene

NCBI:15251

Aliases

AA959795,
bHLHe78, ENSMUSG00000021109, HIF-1-alpha,
HIF1-alpha, Hif1a, HIF1alpha,
MGI:106918, MOP1, NCBI:15251,
OFF:Hif1a

Chr 12

ORFs

16 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
327552	36	ATG ...	MTA ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, MEF, v6-5
460551	51	CTG ...	LDT ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	BMDC, MEF, NSC
459493	36	TTG ...	LIL ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Intronic sORF	E14, Neutrophil, NSC
940062	81	ATC ...	ISY ...	Ribo-seq	ATC		2	sORFs_org_Mouse	Intronic sORF	BMDC, E14
458328	42	GTG ...	VCL ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Intronic sORF	BMDC, E14, MEF, Neutrophil, v6-5
939433	33	ATT ...	ILL ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
939262	57	AAG ...	KSL ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
9729	51	CTG ...	LFL ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, MEF, v6-5
1847494	126	GTG ...	VMV ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	R1E
780026	147	CTG ...	LKA ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Intronic sORF	B_cell, MEF, R1E
663117	39	ATG ...	MSL ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	BMDC, v6-5
660699	33	TTG ...	LLI ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC
940055	123	GTG ...	VSS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	BMDC, MEF
940240	141	TTG ...	LPL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	BMDC, MEF, R1E
661389	51	CTG ...	LKF ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, NSC, v6-5
1040268	93	GTG ...	VFD ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil, R1E, v6-5

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