Transcript 26744 | MetamORF

Transcript

ID CARD

MetamORF ID

26744

ENSMUST00000141589

Name

H2afy-206

Strand

Biotype

retained_intron

Start-end positions

56074359-56090058

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCG ...

Genome browsers

UCSC

Gene

NCBI:26914

Aliases

ENSMUSG00000015937,
H2AF12M, H2afy, Macroh2a1,
MGI:1349392, mH2a1, NCBI:26914,
OFF:Macroh2a1

Chr 13

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
10213	102	TTG ...	LPR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	MEF
1301197	126	AAG ...	KGG ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
1304752	87	ATA ...	IIN ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Intronic sORF	E14
943423	213	AAG ...	KFV ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
671726	84	TTG ...	LFR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	3T3
942163	240	ATT ...	ISA ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Intronic sORF	E14
669499	54	GTG ...	VML ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	3T3
27842	144	GTG ...	VKN ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	E14, Testis
462698	36	CTG ...	LSG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
672397	75	CTG ...	LTL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
27306	222	CTG ...	LPA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
26743	96	GTG ...	VEA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis
27801	207	GTG ...	VIH ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis
669996	48	CTG ...	LSF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
943501	108	CTG ...	LKS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	E14
1302220	150	AAG ...	KTV ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
1303255	96	CTG ...	LEL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	E14
10155	42	CTG ...	LFW ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
10415	135	CTG ...	LEK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
27403	141	CTG ...	LNL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
670071	51	ATG ...	MLS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	3T3
1302950	117	AAG ...	KEF ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
669133	69	TTG ...	LPR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	3T3
942173	45	AAG ...	KLF ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Intronic sORF	E14

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