Transcript 13143 | MetamORF

Transcript

ID CARD

MetamORF ID

13143

ENSMUST00000040828

Name

H2-Ab1-201

Strand

Biotype

protein_coding

Start-end positions

34263209-34269418

CDS Start-stop positions

34263312-34269108

CDS Relative positions

Sequences

Transcript sequence

GAC ...

Genome browsers

UCSC

Gene

NCBI:14961

Aliases

Abeta,
AI845868, ENSMUSG00000073421, H-2Ab,
H2-Ab, H2-Ab1, I-Abeta,
Ia-2, Ia2, IAb,
MGI:103070, NCBI:14961, OFF:H2-Ab1,
Rmcs1

Chr 17

ORFs

28 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
484121	108	CTG ...	LEQ ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Spleen_B_cell
478633	99	CTG ...	LLS ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
480050	141	TTG ...	LLS ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, BMDC, Spleen_B_cell
480638	249	GTG ...	VLL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Spleen_B_cell
483711	246	GTG ...	VLL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Spleen_B_cell
482855	114	GTG ...	VSP ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, BMDC, Spleen_B_cell
480777	90	ATG ...	MAR ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	BMDC, Glioma, Liver, MEF, MESC
955039	204	ATA ...	IHL ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
13142	63	CTG ...	LSR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Skin_tumor
482723	114	CTG ...	LDL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
954443	96	ATG ...	MSL ...	Ribo-seq	ATG	weak	1	Johnstone2016	Downstream sORF	Glioma, Liver, MEF, MESC
798750	90	CTG ...	LCL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, BMDC
799853	249	GTG ...	VSV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell, BMDC
800473	177	CTG ...	LEQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell, BMDC
478499	66	ATG ...	MSS ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	BMDC, Glioma, Liver, MEF, MESC
479671	54	CTG ...	LSR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
954818	219	ACG ...	TIC ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
956364	129	ATT ...	IST ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
481177	57	GTG ...	VQT ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Spleen_B_cell
957270	216	ACG ...	TIC ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
798890	66	CTG ...	LRA ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Liver
797105	174	CTG ...	LGF ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell
799904	123	CTG ...	LDL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Liver
957470	147	CTG ...	LRA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
800324	54	GTG ...	VQT ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC
957402	201	ATA ...	IHL ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
797199	96	CTG ...	LEQ ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC
482592	111	CTG ...	LEQ ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Spleen_B_cell

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