Transcript 24291 | MetamORF

Transcript

ID CARD

MetamORF ID

24291

ENSMUST00000021345

Name

Gtf2a1-201

Strand

Biotype

protein_coding

Start-end positions

91555262-91590009

CDS Start-stop positions

91559744-91589564

CDS Relative positions

Sequences

Transcript sequence

CGC ...

Genome browsers

UCSC

Gene

NCBI:83602

Aliases

6330549H03Rik,
AA536742, AA959775, AW060250,
ENSMUSG00000020962, Gtf2a1, MGI:1933277,
NCBI:83602, OFF:Gtf2a1, Tfiia1,
TfIIAa/b

Chr 12

ORFs

43 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
938738	90	CTG ...	LEL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, E14
323617	75	ATG ...	MTS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
939565	51	TTG ...	LCC ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Overlapping sORF Upstream	BMDC, E14
1299901	192	AGG ...	RKK ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
25008	33	TTG ...	LFL ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Testis
940425	84	AAG ...	KMK ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
323331	36	CTG ...	LRM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
939851	39	GTG ...	VAN ...	Ribo-seq	GTG	strong	4	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, E14, MEF, v6-5
322376	42	TTG ...	LTL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
780639	60	ATG ...	MLL ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
940670	222	AAG ...	KMK ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
997355	30	ATG ...	MLS ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, v6-5
1300403	219	ATG ...	MKK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1344401	72	TTG ...	LFY ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1297510	66	ATG ...	MMM ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1346339	39	CTG ...	LVE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, NSC
327868	66	GTG ...	VTR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1298070	156	ATT ...	IFS ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
1297018	114	AGG ...	RFL ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
24675	42	CTG ...	LLL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Testis
779752	66	TTG ...	LKM ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
1299820	204	ATG ...	MMM ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
939927	132	TTG ...	LAR ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, E14
939774	255	CTG ...	LRE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Overlapping sORF Upstream	BMDC, E14
24290	39	CTG ...	LLQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Testis
1345398	36	CTG ...	LVE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1346132	75	TTG ...	LFY ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, NSC
938857	144	ATT ...	IFS ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
940920	69	TTG ...	LCC ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Overlapping sORF Upstream	BMDC, E14
939020	63	GTG ...	VAR ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, E14
25749	30	CTG ...	LLP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Testis
780986	222	ATG ...	MDF ...	Ribo-seq	ATG		1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
1297607	54	AGG ...	RKK ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
940539	273	CTG ...	LRE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Overlapping sORF Upstream	BMDC, E14
938807	84	ATT ...	ILE ...	Ribo-seq	ATT	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, E14
1346262	36	GTG ...	VES ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
940547	180	TTG ...	LAG ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Overlapping sORF Upstream	BMDC, E14
1298279	81	ATG ...	MKK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
939337	48	TTG ...	LVS ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
939239	162	TTG ...	LAG ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Overlapping sORF Upstream	BMDC, E14
1345746	33	GTG ...	VES ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1300143	123	ATG ...	MTS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
328248	51	ATG ...	MTY ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell

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