Transcript 6472 | MetamORF

Transcript

ID CARD

MetamORF ID

6472

ENSMUST00000034903

Name

Gsta4-201

Strand

Biotype

protein_coding

Start-end positions

78191947-78209349

CDS Start-stop positions

78198290-78209179

CDS Relative positions

Sequences

Transcript sequence

TCT ...

Genome browsers

UCSC

Gene

NCBI:14860

Aliases

ENSMUSG00000032348,
GST5.7, Gsta4, MGI:1309515,
mGsta4, NCBI:14860, OFF:Gsta4

Chr 9

ORFs

19 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1269946	135	AGG ...	RKN ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1271187	63	AAG ...	KTT ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
6471	39	GTG ...	VPL ...	Ribo-seq	GTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, R1E, Skin_tumor, Testis, v6-5
85952	132	CTG ...	LKQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Liver, Testis
1110503	54	TTG ...	LPW ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, v6-5
5992	87	ATG ...	MAG ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Testis
417453	72	ACG ...	TVN ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
85485	33	CTG ...	LYC ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, R1E, Testis, v6-5
86223	36	GTG ...	VPG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative sORF Upstream	E14, Testis
1271464	51	AGG ...	RLF ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
87053	51	ATG ...	MDT ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Testis
84458	39	TTG ...	LAT ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Testis
1522457	36	ATG ...	MAP ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, NSC
1269380	132	AAG ...	KNF ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
87833	150	GTG ...	VPL ...	Ribo-seq	GTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Liver, NSC, R1E, Testis, v6-5
83779	138	TTG ...	LGR ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	E14, R1E, Testis
1273913	57	ACG ...	TER ...	Ribo-seq	ACG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
87436	144	CTG ...	LYC ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Liver, NSC, R1E, Testis, v6-5
1274290	48	AAG ...	KNS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14

Export data