Transcript 12535 | MetamORF

Transcript

ID CARD

MetamORF ID

12535

ENSMUST00000166063

Name

Gspt1-203

Strand

Biotype

retained_intron

Start-end positions

11230912-11237820

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CTT ...

Genome browsers

UCSC

Gene

NCBI:14852

Aliases

AI314175,
AI326449, AV307676, C79774,
ENSMUSG00000062203, G1st, Gspt1,
Gst-1, MGI:1316728, NCBI:14852,
OFF:Gspt1

Chr 16

ORFs

25 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1187787	60	AAG ...	KYE ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
33642	72	TTG ...	LGL ...	Ribo-seq	TTG	strong	11	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, E14, MEF, NSC, Testis, v6-5
693454	30	CTG ...	LAI ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, E14, v6-5
792460	78	TTG ...	LRS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, MEF
1185508	30	AAG ...	KST ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
1187309	273	GTG ...	VGR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	E14
370758	36	ATG ...	MLL ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, v6-5
1186004	279	GTG ...	VEV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	E14
1354994	33	ATG ...	MQA ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
1185816	243	AAG ...	KHF ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
1187741	252	ACG ...	TEK ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	E14
794047	102	CTG ...	LEW ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, MEF
12534	93	TTG ...	LTG ...	Ribo-seq	TTG		10	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, E14, Liver, MEF, Neutrophil, NSC, Skin_tumor, Testis
794160	69	ATG ...	MNE ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	B_cell, E14
374043	36	GTG ...	VVP ...	Ribo-seq	GTG		10	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, Liver, MEF, Neutrophil, R1E, v6-5
474961	33	GTG ...	VPL ...	Ribo-seq	GTG		9	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, MEF, Neutrophil, R1E, v6-5
371017	39	TTG ...	LVV ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, MEF, Neutrophil, R1E, v6-5
1188040	60	AAG ...	KLK ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
1187744	81	AAG ...	KTA ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
693440	42	GTG ...	VPI ...	Ribo-seq	GTG	moderate	8	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, E14, MEF, NSC, v6-5
1186564	72	AGG ...	RTL ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
692025	33	TTG ...	LKR ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF, NSC, v6-5
1185558	45	ACG ...	TRQ ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1187870	81	AGG ...	RKN ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1188282	42	AGG ...	RQV ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14

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