Transcript 367576

Transcript

ID CARD

MetamORF ID

367576

ENSMUST00000134870

Name

Gsk3b-204

Strand

Biotype

processed_transcript

Start-end positions

38143331-38191631

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGT ...

Genome browsers

UCSC

Gene

NCBI:56637

Aliases

7330414F15Rik,
8430431H08Rik, C86142, ENSMUSG00000022812,
GSK-3, GSK-3beta, GSK3,
Gsk3b, MGI:1861437, NCBI:56637,
OFF:Gsk3b

Chr 16

ORFs

18 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
372928	54	CTG ...	LEN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
367581	93	GTG ...	VYR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, NSC
373560	87	TTG ...	LVW ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, NSC
371572	48	TTG ...	LDP ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, MEF, R1E
372327	75	GTG ...	VQS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
1715170	39	ATG ...	MCF ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	MEF
373695	102	TTG ...	LEM ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, MEF
370335	96	ATG ...	MDH ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	Brain, MEF
368335	51	TTG ...	LLD ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, MEF, R1E
373075	60	GTG ...	VIL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
372241	84	GTG ...	VWY ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, NSC
370675	135	TTG ...	LYM ...	Ribo-seq	TTG		4	sORFs_org_Mouse	ncRNA sORF	Brain, MEF, NSC, R1E
369171	120	CTG ...	LFR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, MEF
367575	42	TTG ...	LPS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
367866	66	TTG ...	LES ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Brain
369064	120	CTG ...	LVL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, R1E
369731	117	GTG ...	VLD ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, R1E
369096	114	CTG ...	LDY ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, R1E

Export data