Transcript 88098 | MetamORF

Transcript

ID CARD

MetamORF ID

88098

ENSMUST00000193987

Name

Gpx1-204

Strand

Biotype

protein_coding

Start-end positions

108339276-108340250

CDS Start-stop positions

108339481-108340136

CDS Relative positions

Sequences

Transcript sequence

AGT ...

Genome browsers

UCSC

Gene

NCBI:14775

Aliases

AI195024,
AL033363, CGPx, ENSMUSG00000063856,
Gpx, GPx-1, Gpx1,
GSHPx-1, MGI:104887, NCBI:14775,
OFF:Gpx1

Chr 9

ORFs

13 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
974443	93	ACG ...	TFE ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Liver
88097	66	GTG ...	VCC ...	Ribo-seq	GTG		19	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
6140	30	CTG ...	LLI ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	sORF Upstream	B_cell, Brain, Liver, MEF, Neutrophil, NSC
417649	102	ACG ...	TDS ...	Ribo-seq	ACG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	C2C12, E14
6192	144	CTG ...	LRH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF
6552	54	TTG ...	LRM ...	Ribo-seq	TTG	weak	7	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, MEF, Neutrophil, NSC, Spleen_B_cell
5900	48	ATG ...	MSR ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse Johnstone2016	Alternative Overlapping sORF Upstream	3T3, B_cell, Glioma, Liver, MEF, MESC, Neutrophil
974465	45	ATC ...	ISS ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
883269	81	ATG ...	MVR ...	Ribo-seq	ATG	moderate	1	Johnstone2016	InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
974452	102	ACG ...	TIC ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
6632	33	GTG ...	VLL ...	Ribo-seq	GTG	weak	6	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, Brain, MEF, Neutrophil, NSC
440117	75	GTG ...	VDW ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, MEF
84270	120	GTG ...	VCC ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Brain, MEF, Neutrophil, NSC, Spleen_B_cell

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