Transcript 11140 | MetamORF

Transcript

ID CARD

MetamORF ID

11140

ENSMUST00000111817

Name

Gmfb-202

Strand

Biotype

protein_coding

Start-end positions

46808149-46822242

CDS Start-stop positions

46811752-46822103

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

NCBI:63985

Aliases

3110001H22Rik,
3110001O16Rik, AI851627, C79176,
D14Ertd630e, ENSMUSG00000062014, Gmfb,
MGI:1927133, NCBI:63985, OFF:Gmfb

Chr 14

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1308546	294	ATC ...	IAR ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Overlapping sORF Upstream	E14
343824	78	CTG ...	LKN ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	MEF
28485	63	ATG ...	MMM ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14
29317	87	TTG ...	LCI ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
343237	39	GTG ...	VSL ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF
785133	48	GTG ...	VRQ ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
11216	165	GTG ...	VCC ...	Ribo-seq	GTG		4	sORFs_org_Mouse	CDS sORF	3T3, MEF, Skin_tumor
1000358	189	TTG ...	LLQ ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
11139	240	TTG ...	LRK ...	Ribo-seq	TTG		3	sORFs_org_Mouse	CDS sORF	B_cell, MEF, Skin_tumor
30174	78	ATG ...	MMM ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, Spleen_B_cell, Testis
349924	57	TTG ...	LTR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
1000373	222	ATG ...	MGC ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
945006	48	ATG ...	MNA ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF
30178	102	TTG ...	LCI ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Spleen_B_cell, Testis
30242	72	ATG ...	MAE ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver, Testis
28651	57	ATG ...	MAE ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
30383	75	ATG ...	MMA ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver, Testis
680331	300	TTG ...	LSF ...	Ribo-seq	TTG		2	sORFs_org_Mouse	CDS sORF	3T3, Brain
29952	60	ATG ...	MMA ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Liver
11212	171	TTG ...	LSV ...	Ribo-seq	TTG		4	sORFs_org_Mouse	CDS sORF	3T3, MEF, Skin_tumor
28498	30	CTG ...	LLY ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Spleen_B_cell

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