Transcript 72250 | MetamORF

Transcript

ID CARD

MetamORF ID

72250

ENSMUST00000204680

Name

Gm45233-202

Strand

Biotype

nonsense_mediated_decay

Start-end positions

43444131-43463587

CDS Start-stop positions

43444148-43463205

CDS Relative positions

Sequences

Transcript sequence

GTG ...

Genome browsers

UCSC

Gene

Gm45233

Aliases

Gm45233

Chr 7

ORFs

56 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
72249	117	GTG ...	VEE ...	Ribo-seq	GTG		6	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, E14, Liver, Neutrophil, Testis, v6-5
1067153	123	GTG ...	VVT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Neutrophil
1575892	147	AAG ...	KRV ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF
1068186	99	CTG ...	LAK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, Neutrophil
74797	186	CTG ...	LAM ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, E14, Neutrophil, Testis
878552	39	ATG ...	MSL ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, E14, Neutrophil
596533	90	CTG ...	LQE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	MEF, v6-5
76874	72	GTG ...	VTA ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	BMDC, MEF, NSC, Testis, v6-5
423711	75	CTG ...	LIP ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, MEF, Neutrophil
1067820	90	CTG ...	LAE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, Neutrophil
530953	93	CTG ...	LLQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	MEF, v6-5
422404	117	CTG ...	LTS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, MEF, Neutrophil, NSC
1517052	60	GTG ...	VFP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, NSC
1067362	30	TTG ...	LTG ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, E14, Neutrophil, NSC
74503	84	CTG ...	LVK ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, Neutrophil, Testis
974325	168	CTG ...	LRA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Liver, MEF
535438	39	TTG ...	LKW ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, MEF, Neutrophil
423992	129	CTG ...	LGV ...	Ribo-seq	CTG		5	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, MEF, Neutrophil, NSC
1067130	111	GTG ...	VAR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Neutrophil
223903	99	GTG ...	VIS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, MEF, Neutrophil
72930	117	CTG ...	LQV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Neutrophil, Testis
1068965	132	CTG ...	LPA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Neutrophil
531872	36	CTG ...	LVA ...	Ribo-seq	CTG		6	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, E14, Liver, MEF, Neutrophil
1067773	30	ATG ...	MMT ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, MEF, Neutrophil, NSC, v6-5
1068204	120	GTG ...	VTA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Neutrophil
1067615	138	CTG ...	LKL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Neutrophil
1252877	183	AGG ...	RSQ ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
974304	30	CTG ...	LDW ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, Liver, MEF, Neutrophil, v6-5
535061	33	GTG ...	VAK ...	Ribo-seq	GTG		5	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, Liver, MEF, Neutrophil
76487	105	GTG ...	VRL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, Neutrophil, Testis
424117	66	GTG ...	VCR ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, E14, MEF, Neutrophil
535011	72	GTG ...	VWK ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, MEF, Neutrophil, NSC
75074	156	GTG ...	VEI ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, E14, Neutrophil, Testis
224383	54	GTG ...	VET ...	Ribo-seq	GTG		5	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, MEF, Neutrophil, NSC
592613	30	CTG ...	LWP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
1255398	36	AGG ...	RWR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
974321	150	ATA ...	IPG ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver
535410	198	CTG ...	LEG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, Neutrophil
424500	123	GTG ...	VDL ...	Ribo-seq	GTG		5	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, MEF, Neutrophil, NSC
1067168	33	CTG ...	LCA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, Neutrophil
1069745	153	CTG ...	LET ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, Neutrophil
1067635	177	GTG ...	VER ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, Neutrophil
534116	90	GTG ...	VEE ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, MEF, Neutrophil
974311	144	AGG ...	RVI ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Liver
915743	162	AAG ...	KKK ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC
1517407	135	CTG ...	LPS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	NSC
1518009	69	CTG ...	LLW ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	NSC
974327	63	TTG ...	LFL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver
1098917	33	GTG ...	VRL ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, MEF, v6-5
75250	153	GTG ...	VKH ...	Ribo-seq	GTG		6	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, E14, MEF, Neutrophil, Testis, v6-5
74468	81	GTG ...	VKE ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, Neutrophil, Testis
73547	168	GTG ...	VVT ...	Ribo-seq	GTG		6	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, E14, MEF, Neutrophil, Testis, v6-5
1068323	33	TTG ...	LMM ...	Ribo-seq	TTG	weak	6	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, MEF, Neutrophil, NSC, v6-5
75263	30	CTG ...	LSR ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, MEF, Testis, v6-5
531223	147	GTG ...	VVK ...	Ribo-seq	GTG		5	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, MEF, Neutrophil, NSC
534275	204	GTG ...	VTL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, Neutrophil

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